CI01000086_01296658_01297947


Basic Information

Item Value
gene id CI01000086_01296658_01297947
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1295830 ~ 1298059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01296658_01297947.mRNA
AGATCTTGAAGAAGCATTGAAACGGTACTTTCCCAGAGGGTTTCCTTCTCTTTGTAGGGCAAAGCAACTGCTTTGTCCTTTTTGTTTGGATGCATTTTTCCAGAACTCCAAAATGAAGCCCTTAACTCCCACTGGTTCACCTTCTCCGCTGCGGCTCCTAAACAAGGGGCCTGATTACCTTCGCAGGCAAATGGATGCCGGAAGCAGGGGTCATTCAATTAGTGCTGTAGAGCGTCTGGAAGCAGACAAGGCAAAGTACGTCAAGAGTCAACAGGTCATAAACAACAAGCAGGAGCCCGTCTTAGTGCCCTGTGCAACCCCTCCACCGGTGCCCCGTCGAAACTTCACTGTGTCCACTCCTTCAACACCTGTTCTCCCACCTCGAAATCAAATGGCACCTTTCTCCGCACCGCAGTTCTTGAGGGATGAAAATGAGGATGACTCCAGGAAAGAGAACTGTCAGAACGAAACTGATGTGGAAACCAACAATCGCAACAATGCAAATAAACCTCCCGTACCTTCCCCAAGAACTCCAACCATTGCTCCATTAGTTGCCCCACATAGTGCTCCAATAATGCGGAGGAGCAACGGCAAACGCATGCTGCGTCCGGACTCCCTAGTCATTTACAGACAGAAGAAAGAGTGCAAGAGTCCCAGCAGTGGTGGCGAAAATGGCAACACCAACATGGAGGTCAAGGGCTACAGCTTCGTACGACGGCTCTTCCAGGGATCCATGCGCGAAAAGAGCAGCGGTACCGAGGCTCATAAAATGGTGATAAATGAGGAGAAGGCGTCTTCCTCTCGAGACGGGGATTCGCGAATGTCCTGGTCCAATGATAAAGACACTGTCGACGGTGGAAACGAGACCAGACGATCGAGCAAATCTGAGCGAGAGCACTCAATGCCGGAGACTCAAAACAATAACACTGGTGTTCAGAAGCAATCTAAGAACGGCATGATCAACAGTTTACGAAACAGCATTGGGAACTCCAACAATAACGACATGGATCCATGGAAGCCCGTCGTTCCAAGGATGCGGGCCGATTTGAAACGCTCCAAGTCAGAATTGCGACTACGCTGCTCGCTAGCCATGTCCGAGCAGGAGCGCTTCTTCGACTACTGCGGATTGGACTTTGATATGGTGGAGAGGCTCGGACCGGAGAACTTTCTAAAAGGGGCAAGTTCAGTCGATACACTCTCGCTGCTACTGAGGAGCGTCGGAGGCGGCGGCTCAGAGCCCAGTGAGTTTTCCCGACATTCCGGGGAAGGGATTTTCCAGGAGGAACTGGCCGAGCAGATCCCCACAGGTGTCTCGATTATCGAGAGAAATGCACGTGTCATAAAGTGGCTCTACGGTTGCAGGAATGCAGCTCAGGAGGGTCCTAAAGAGTCTACTGTTTGATTCTCACGGTGACTAAACTGAAGACTTTTCGGAGCCGTGTTCAAAAACGGAAAACTATGCTGTATTTATTTCATGTGGGACATTTGTATTTAAGAGATTTGTTTGGCTTTTCACAGCCAGTATGAGAACATTGTTACACAAAAAGCTGCAAACCGACACTTCTTGTCATGACCTACACTGTGGTTGTGTCTGAAATCGCCCCCTTATACCCTCATTCACTATTCCATACATTAGTATACTAATATAGTATATTGAATGAAAACAAGTGAGCGAATTTTCCTGTGGACGCCAACTTTTGGGAAACTCTCACGCTCACATTGCATGGCTAGAGAATAGTTCAGTTGTACACTTATTATTGCAGTGCATTGTGGGATTGAATGAGTGCACTCAATAATGTCTACTATGGTTTCTGATATTTTAGTGCACTGTATAAGGGTATAGGGGCGATAGTGATGTCATCTCTTGTTCTCTGTATATAGAAAGACATGAGTCCGTCCTGTTACTTCTGTTCAGAAACAATTATTTGTTGAGCGTAACTTAAAGAACATGTCATCTGATGAATAATTTAACATTGAAAACCACTAAGCTTTTCTCTGGGGCTGGGAAACCCAATGCATGAGTGTTAAATGAACCATGTGTACCTCATTTCCCAACTGTCCCAGTTTAGTTTCTGTGTTGCCTTTTTTCCTTAAACGCAGGCGTTGGAACAAACACACAGAGCACCCCTGTGGGGATATTAATGCACTGATTTGGAGAAAGAGAGACGGAGTGAGAGCTATATATACTGATATGAAACGTATTTTTTAACACTGAGTGTATGCAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01296658_01297947.mRNA True 2230 mRNA 0.47 1 1295830 1298059

Neighbor

gene id symbol gene type direction distance location
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 35805 1257926 ~ 1260025 (-)
CI01000086_01237966_01253245 NA coding downstream 42542 1237911 ~ 1253288 (-)
CI01000086_01193934_01219331 NA coding downstream 76390 1193715 ~ 1219440 (-)
CI01000086_01101333_01138683 NA coding downstream 157147 1100760 ~ 1138683 (-)
CI01000086_01069219_01094068 AGO3, EIF2C3, I2C3 coding downstream 201579 1061523 ~ 1094251 (-)
CI01000086_01313364_01320865 NA coding upstream 14963 1313022 ~ 1322014 (-)
CI01000086_01670242_01672517 NA coding upstream 371729 1669788 ~ 1674496 (-)
CI01000086_01852638_01897719 UBR5 coding upstream 554087 1852146 ~ 1897719 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 616954 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 649948 1948007 ~ 1983560 (-)
G299283 NA non-coding downstream 58622 1177817 ~ 1237208 (-)
G299299 NA non-coding downstream 64694 1228921 ~ 1231136 (-)
G299128 NA non-coding downstream 235737 1059004 ~ 1060093 (-)
G299119 NA non-coding downstream 251210 1036036 ~ 1044620 (-)
G299331 NA non-coding upstream 43384 1341443 ~ 1346880 (-)
G299321 NA non-coding upstream 55347 1353406 ~ 1354349 (-)
G299322 NA non-coding upstream 72952 1371011 ~ 1373189 (-)
G299323 NA non-coding upstream 83132 1381191 ~ 1385500 (-)
G299345 NA non-coding upstream 102876 1400935 ~ 1401281 (-)
G299107 NA other downstream 169032 1126738 ~ 1126798 (-)
G299173 NA other downstream 527951 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 699201 587765 ~ 596739 (-)
G298872 NA other downstream 759520 535023 ~ 536310 (-)
G299528 NA other upstream 370147 1668206 ~ 1695177 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 1066272 2364331 ~ 2373059 (-)
G299598 NA other upstream 1567623 2865682 ~ 2868103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011086 si:ch211-107n13.1 coding NC_007127.7 CM002900.2 51370106 ~ 51407525 (-)