CI01000086_01371003_01393249 (SLC9A1)


Basic Information

Item Value
gene id CI01000086_01371003_01393249
gene name SLC9A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1371003 ~ 1393807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01371003_01393249.mRNA
GGTTCCACCTGATCCCTCGTGTGTCCTCTATCGTACCGGAGAGCTGTCTGCTAATCGTGGTGGGCCTGCTGGTCGGTGGTCTTATGAAGCTGGTAGGCGAGTCTCCTCCGGCGCTGGAATCCAAGATATTCTTCCTCTACCTGCTGCCTCCCATCATCCTCGATGCCGGCTATTTCCTGCCCATACGACCCTTCACTGAGAACCTGGGCACCATTCTCATGTTTGCGGTGGTGGGGACCCTTTGGAATGCCTTCTTCGTTGGTGGTCTACTGTACGGGGTGTGCCAGCTGGAGGGCCTTCAACACTTGCATGTGGACCTCCTGTCGTGCCTGCTGTTTGGGTCCATCATCTCAGCCGTAGACCCTGTGGCCGTGCTGGCTGTGTTTGAGGAGATCCACATTAATGAGCTGCTCCACATCCTGGTGTTTGGAGAGTCTTTACTCAATGATGCCGTCACTGTGGTGCTCTATCATCTGTTTGAGGAGTACTCCAGTGTGGGTACGATCACTGTCACAGATGTGTTTCTGGGTATCGTGTGTTTCCTGGTGGTGTCGTTGGGTGGTATCGTGGTGGGCGCCATCTACGGCATCCTGGCGGCCTTCACTTCACGGTTCACCTCACACACTCGTGTCATCGAGCCTCTGTTTGTCTTCCTCTACAGCTACATGGCTTATCTGTCCGCGGAGGTGTTCCATCTGTCCGGCATCATGGCGCTAATAGCGTGTGGTGCCGTCACGCGTCCCTACGTGGAGGCCAACATATCCCATAAATCCCACACCACCATCAAGTACTTCTTGAAGATGTGGAGCAGCGTGAGCGACACGCTCATCTTTATCTTCTTGGGAGTGTCGACAGTGGCCGGGCCGCACCGCTGGAACTGGACCTTCGTCATCATGACCGTTATTCTCTCTCTGGTGGCTCGTGTTCTTGGTGTTGTCGGCTTGACCTTCATCATCAACAAGTTCCGTATCGTGAAACTCACCACTAAGGACCAGTTTATTATAGCTTACGGTGGACTGAGAGGAGCGATCGCCTTCTCCCTGGTCTACCTGCTCAAACCTGAGCACTTCCCCATGAGAAACATGTTCCTCACTGCCATCATCACTGTCATCTTCTTCACTGTATTTGTGCAGGGTATGACCATTCGACCTCTGGTGGACCTCCTGGCAGTGAAGAAGAAACAGGAAACAAAGCGATCCATTAATGAGGAGATTCACACACAGTTTTTGGACCATCTGCTAACTGGCATTGAGGATATCTGCGGACATTATGGACATCATCACTGGAAGGACAACAGTTCCACATTGATTTCAGACACAGCTTTAGTGTTTCCTCTGCCACTGATGATGGGTTTGTTATCTGGACTTCTGCAGAAAATAAAAATAACCCTCCAGCGATCATATCAGAAGCTTCACCATTTCCTTCTCATTTCCAGACTGAACCGGTTCAATAAGAAGTACGTGAAGAAGTGCCTGATAGCGGGTGAGCGCTCCAGAGAACCTCAGCTGATCGCCTTCTACCACAAGATGGAGATGAAGCAGGCCATCGAGCTGGTGGAGAGTGGCGGCGGATCCAAGCTGCCTTCTGCCATGCCGTCCACCGTCTCCATGCAGAACATCCATCCCAAGAAGCTTCCTCAGGACCGAGCTCTGCCGCAGCTCTCCAAGGCCCGTGAGGAAGAGATCAGGAAGATTCTGCGCACAAACCTGCAGAAGACCCGCCAGAGACTGCGCTCGTACAACAGACACACACTGGTGGCGGATCCGTATGAGGACGGCTGGAACGACATCCTCATCAAACGGAAGAAAATGATAGAGCTGGAAAAGAAGATATCACAGATGAACAATTACCTGACTGTTCCAGCTCCGCCTCCCGATTCACCGACCATTGCTCGAGCTCGACTGTCTTCGGACCCTCAAGCATGGGGCATCAAGGCCGTCACAGAAAGCATCCCCATAATTAAAGTGGACCTCGCCTCACCCCAGAGTCCAGAGTCTGTCAACATGGTGGACGAGTTCAGCAAAAAAGGAAGCCAGCCGAAAGAGAGGGAGGAGGAGGTCGGCCTGGTGATGAAAGTACCCTCTCCTGCGAAGGAGAGAAAGGACAAAAAGGCCGACGAGGATGACGACAAGGAGCCGCAGCAACGGCTCATGCGCTGTCTCAGCGATCCGGGCCCCGCCGCCGAAGAGGAAGACGAGGATGAACCCTTCCTCCCCTGAGAGAGCAGACGAGGATGAACGAGCCTCAGCCGTCTCCTCTCAGACAGTATCTGCAGTCCTTAACTGCTGTAACATGGAGGACAGATTTATATTCTATAGGAAGCCAAAACGAGAACGTCAGAAAAACCAAACTGTTGATGAACTAAATTAAAGAAAATGAAAGGGAGCGATCAAAAAAAAAAAAAGCCATTTATTATTTTTTTTTTGCTTGTCATTTGTTCTTTTCATTTTAAGCCTAAAGGCTTGTTCACACCAAGCACAATATTTATAATAGTAATAAAACGTTAAAGAAAAATCATTCTAAATATAAAAGAATAGCTGAGTCCACAACAACTGTGACAATAACGGCATCGTTACAATCAGTTTCAGAATGAGTTTGATGAATGATAAAAAATATTGAGCAAATCAGGATCCACCCAATTTTAAAGTGTTCGAGCATTTATTATTATTAAAAATATATATTTTATTGAATTATAACATACTATTAATACATACTGTAAAATTTAAAGAGTATTTCATAATTATAATATATTGCATCATAATACAATATATGTTATA

Function

symbol description
slc9a1 Enables calcium-dependent protein binding activity; protein phosphatase 2B binding activity; and sodium:proton antiporter activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; inorganic cation transmembrane transport; and regulation of heart contraction. Located in several cellular components, including membrane raft; nucleoplasm; and plasma membrane. Is integral component of plasma membrane. Part of cation-transporting ATPase complex. Implicated in autosomal recessive spinocerebellar ataxia 19 and congestive heart failure.

GO: NA

KEGG:

id description
K05742 SLC9A1, NHE1; solute carrier family 9 (sodium/hydrogen exchanger), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01371003_01393249.mRNA True 2777 mRNA 0.48 11 1371003 1393807

Neighbor

gene id symbol gene type direction distance location
CI01000086_01265644_01273085 NA coding upstream 97557 1265364 ~ 1273446 (+)
CI01000086_01150842_01165271 DHDDS coding upstream 205247 1150842 ~ 1165922 (+)
CI01000086_01098078_01098642 NA coding upstream 272198 1097935 ~ 1098805 (+)
CI01000086_01053732_01056868 NA coding upstream 313884 1053357 ~ 1057119 (+)
CI01000086_01044588_01047516 NA coding upstream 323402 1044469 ~ 1047601 (+)
CI01000086_01413340_01416793 MAN1C1 coding downstream 19488 1413295 ~ 1416815 (+)
CI01000086_01492811_01493179 NA coding downstream 99004 1492811 ~ 1494000 (+)
CI01000086_01506402_01526965 NA coding downstream 112452 1506259 ~ 1527057 (+)
CI01000086_01546688_01584240 NA coding downstream 152369 1546176 ~ 1589583 (+)
CI01000086_01626671_01626957 NA coding downstream 232864 1626671 ~ 1627917 (+)
G298391 NA non-coding upstream 110365 1237921 ~ 1260638 (+)
G298413 NA non-coding upstream 141569 1229030 ~ 1229434 (+)
G298386 NA non-coding upstream 146657 1188408 ~ 1224346 (+)
G298382 NA non-coding upstream 186546 1179163 ~ 1184457 (+)
G298377 NA non-coding upstream 225447 1145280 ~ 1145556 (+)
G298214 NA non-coding downstream 25635 1419442 ~ 1427548 (+)
G298234 NA non-coding downstream 88634 1482441 ~ 1486554 (+)
G298472 NA non-coding downstream 261743 1655550 ~ 1656075 (+)
G298485 NA non-coding downstream 274405 1668212 ~ 1695255 (+)
G298381 NA other upstream 194087 1172156 ~ 1176916 (+)
G298366 NA other upstream 223136 1136660 ~ 1147867 (+)
G298208 NA other upstream 390893 947191 ~ 980110 (+)
CI01000086_00499939_00501377 NA other upstream 868887 498625 ~ 502116 (+)
G298529 NA other downstream 483083 1876890 ~ 1881453 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 1413776 2806368 ~ 2845762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010296 SLC9A1 coding NC_007127.7 CM002900.2 51462620 ~ 51528483 (+)
bowfin (Amia calva) AMCG00010934 LOC106605147,LOC101067841 coding CM030133.1 CM030133.1 5002886 ~ 5030530 (-)