XLOC_010829


Basic Information

Item Value
gene id XLOC_010829
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32043389 ~ 32049993 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022181
TAAACAGGCATAATATTggataaatataaacatatatacactaCCACAGAGAGGGTTGAGGTCAAAAAGAATGACGCACAAATTCTTATGCTCACCAAGACCGCATTAAGTTGATCAAATacacagtaaaaacagtaaattGTCTATTTTAGAATTAATTTACTCCTGTGATGCCAATGTATTGAGCATCATTACTCCAATCCTtggtcttatttttattttctttgattaGCATTTATTCAACACTATTTGTAATCCCCTTTCTGTCTCTTTTGATCAAATACGCTCACTTGTTTATTAAAAGCAAAAATCTGACTTAGACACTAGAATTGGTGCGATATACAGCACTAAAGCCTTAATACGGCCTTGGATCTTCATCGGGGTCAAAAGCGTAATTGTTGTGTTGATTCCACTGTGTAGCTGCTGTGTGTTGAAAAGGCTCGTTCTCTGTATTTAGCAGCTTGGGTTCATGTTCTGCTTTCTGCATTGTGGCATTCAGCTCCTCAATTTGTCTGATCAGGAATTGCTTATCACGCTGTTCCTGTTACACACGGATAAAGACAAATCAAATTGGAAGCAAGAAAGTCTTTGTTCAGGTTATCTGCTCCCATAGAGTGTACAGCAAAACACCCAAACTGACCAAACGCAAGAACACTGCCCTACAACGAACAACAGAGAATAAGCAGCATTGCAAGAGCAGAAAATAGAATTACAACAAAGACCAAATCAAAGAGAGCGGTGGATGGATGAACAATGCGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022181 True 759 lncRNA 0.38 2 32043389 32049993

Neighbor

gene id symbol gene type direction distance location
XLOC_010828 CR854927.1 coding downstream 4326 32028079 ~ 32039063 (-)
XLOC_010827 gstk1 coding downstream 29460 32009203 ~ 32013929 (-)
XLOC_010826 gstk4 coding downstream 35108 31982083 ~ 32008281 (-)
XLOC_010825 CR854927.4 coding downstream 62441 31977693 ~ 31980948 (-)
XLOC_010824 styk1b coding downstream 67120 31965340 ~ 31976269 (-)
XLOC_010830 cnot3a coding upstream 60202 32110195 ~ 32128345 (-)
XLOC_010831 CR854927.2 coding upstream 102206 32152199 ~ 32163795 (-)
XLOC_010832 kpna5 coding upstream 117437 32167430 ~ 32184460 (-)
XLOC_010833 rwdd1 coding upstream 147561 32197554 ~ 32204470 (-)
XLOC_010834 calhm5.2 coding upstream 155667 32205660 ~ 32208728 (-)
XLOC_010626 CR392024.2 misc downstream 11148214 20895112 ~ 20895175 (-)
XLOC_010821 NA non-coding downstream 151357 31882148 ~ 31892032 (-)
XLOC_010820 NA non-coding downstream 161766 31878685 ~ 31881623 (-)
XLOC_010817 NA non-coding downstream 282258 31760113 ~ 31761131 (-)
XLOC_010811 CR855311.4 non-coding downstream 392206 31646390 ~ 31651183 (-)
XLOC_010838 NA non-coding upstream 298780 32348773 ~ 32378676 (-)
XLOC_010839 NA non-coding upstream 337583 32387576 ~ 32389474 (-)
XLOC_010840 NA non-coding upstream 508062 32558055 ~ 32559783 (-)
XLOC_010842 CR848729.1 non-coding upstream 524117 32574110 ~ 32574236 (-)

Expression


Co-expression Network