CI01000086_01670242_01672517


Basic Information

Item Value
gene id CI01000086_01670242_01672517
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1669788 ~ 1674496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01670242_01672517.mRNA
AGAAGAACTACGTGACGAAATTCTCAAGTTAACAACATGTTATGAGGAGTTTGGGCTCTAAACACAAACATCAACATGCTAAAATGAAAGCGGTGACATCCAGGAAAACACATTTGAACTGCATTTTAAATGCATTTGCATTCTGCAAATCCACTGCAGAATGGATTTTAACATGGTAAAATGTGTTAAACGGCTGAAAGCAGCATGCATGCACATAACCCAATAAGAAACACCCACTTAAATCTGTAAAGTGATCAACAACTGCTTTTATGTAGGGGTGTAACGATACGCAAAACTGATGATTCAGTTTCGTACCTCAGTTTTGAAGACACTTTTCGGTTCGGTACAAACAACCCAAGTTGGGTTGAAAATGGACAAATCCAGCAAATGGGTTGTTTTAACCCAGCGGTTGGGTTAAATGTTTGCCCAACCTACTGGGTAGTTTATTTAACTCAACTATTGTTTAAAAATTACTGTATTGCTTGCTTAAAATGAACCCAAATATGTTGGGAATTAACATTTATTAATATGTTTAATAAATGAACATTTATTTATAAGTTTAATAAATAATAATTAAACAATAATCATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAACAGATTTTTTTCCAACCTATTTTGGGTTAATTTTAAGCCAGCCTTACAGTAATTTTTAAACAATAGTTGAGTTCAATAAAACTTCACAGCACGTTGGGCAAACATTTAACCCAACCGCTGGGTTAAAACAACCCAATCGCTGAGTGTGTCCATTTTCAACCCAGCTTGGGTTGTTTTAACCCAGCATTTTTTAGTGTACGGTTTGGTACAGCAGGTGGAGAAAACAAGTTGTGTCTCTGTCTTTAAATAAATTCAATTATAATTAAAAGTTTCTTAAGAATAATAATAATAAAAAAAATATCTCTGCTAATGCTGTAAACTATTTAAGGGAGCCTTTACTTGCACATTGCTATAATAATAAAGTTTCAGAGCCCAAATTATTAACCTAAATTCAGTTGCTATTTGTTTTTTCATATAATAATGAACACTCAAATAACAAATTGTATGCACACTTGTAAACTGCACATTAGGCAGTTTTTGCATTCACTTCTAAATGTTTTTACTCCAATTCGTTGTTGAAATATAATCATTTACACAGTGGCTGTCATTTTCATGACATATTTTTTTAAACATACATTAAATAATCAAGACATCACTAACTAGTTAAGTAAAATATAATAAATATAGGCTAATATAGTGCATATATTTAGTGAGAGTTTATTTCTGGCGAACTAACAAGCTAGCTTGAGGTAAATGCAGTGTTTTTCATTTTACAATCTGTTTTACTGACATCTTTCCGCTATTGAAACACAGATTGGGTGATTACACGAGATATTATACTTTCAGTGAGTTGTACTGTATCTTTCAACATACCTTCAGATGTTCATTCATGTTTATTCGTTAAAGAGGAAGAGATGATCGTGTTAACTCGCGCTCCGCGCTGCCGCTTGAAATGAGGCGCCTGTACAGCGATCTGTCACTCACACCACATTAAAGAGCGTCAAAACTGCAATTTTTGTTTGAATTTCGTGATAAAATGGACAGAACACTTTGTTTCTTATCGAAAGTAACAAAATGCGGAGCTTATTGCAATTATTGGTGGGTAATGGTAGTTAAGCTACAACGCTGTAGATCTAATGGGCAGGGCCGGGCGGGGTGTGTTCGGTACACCAAGAGTGTATCGGTTTTCAGTTCGGTTTGAATATCGCTACACCCCTAGTTTTATGCGATCAGATGTGAACAGTGTAAAAGTTTCATTCAAGTCCCTTTTACCAGATAAACACACTCACATCAATAATAGTATGTCAGAAATAATCTGTTCAAAACTGCATCCTTTTAATGTAACTCTCACATCTGAGCATGTGTGCGGCAGACTGTCTCATCTGAACTCACCGCATGAGCTCAATCATGTCTCATGAGGAGGGCTGCCGAGTCATCATGGGCGTCCGGAGAGTGATGGGGGCCCGGGGTGGGCAGGCTGGCACTGACAGGCCTCTTCCAGCCTCATTAAATCCCCAGATGGACAAAGGACTGGTGCATGACATCAGACCAGATCTCACAATCTCTTCATGTGGAGGTTCAGACAACAATATGAACTTAGTCAGGGCGAGGAGGACAGGACAAAGCAGACAAACAGTGAATCTGGCAGAACTCTCCTGTAATAAAGATAAAAACCGCCTTCAGGCTGAATCGTCTCTTTACATTCTATCTCTGGGCGACAGACACAGAAAATGCATCAGCTCCACAGAACCTGAAGGCAGGACGTGTTCAGAAAGCCTGATCTCTGAACTTTCTTCGTCCTTGAGAGCAGATCTCTTCATATCTTCACACATCCGCTGATGATAATCAAAAGATCGGCATGCTTGTGTCAACTAGAAGCGCAGAGCTCGAAAAGCTCATAAACCTCTAGAAATTATATTTGGCCCTTTCTTTATCCATAGGATCGCAGATGGCAGTGGCAGAATGTGGGGTTTATGTGAATGAGAAAACGACATGAAACCAGATTAGAGCGCATTCGTCAAGCTTAGAGGGAATGAAGGTGTGCTGTCGCTCATTTTGATTTATTAGCCGCCCTTGATGGAGATCTCGTCTCTGCTTTCTGCCCTTCAGATAGTTCATACATGCCTGGCCGACTATAATGGAGTTAAATATAGTTTGGCAGAGGAAGGGTTTATGGTCTGTCGATATGCTGAAATGAGTTTTTGAGCACATAAATTTACAAAAATACATTTCAGCTCAGTGCAAGTTGATCATGTTTGAAAGTGACCCGTGTCACAAGAACTTAGAAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01670242_01672517.mRNA True 2877 mRNA 0.38 2 1669788 1674496

Neighbor

gene id symbol gene type direction distance location
CI01000086_01313364_01320865 NA coding downstream 347774 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 371729 1295830 ~ 1298059 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 409763 1257926 ~ 1260025 (-)
CI01000086_01237966_01253245 NA coding downstream 416500 1237911 ~ 1253288 (-)
CI01000086_01193934_01219331 NA coding downstream 450348 1193715 ~ 1219440 (-)
CI01000086_01852638_01897719 UBR5 coding upstream 177650 1852146 ~ 1897719 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 240517 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 273511 1948007 ~ 1983560 (-)
CI01000086_01994840_02008387 TPPP coding upstream 320099 1994595 ~ 2008387 (-)
CI01000086_02018950_02030464 NA coding upstream 344324 2018820 ~ 2030525 (-)
G299527 NA non-coding downstream 2192 1667350 ~ 1667596 (-)
G299522 NA non-coding downstream 16188 1653336 ~ 1653600 (-)
G299519 NA non-coding downstream 19460 1650101 ~ 1650328 (-)
G299518 NA non-coding downstream 19729 1649751 ~ 1650059 (-)
G299354 NA non-coding downstream 23276 1644013 ~ 1646512 (-)
G299560 NA non-coding upstream 128365 1802861 ~ 1803892 (-)
G299478 NA non-coding upstream 131590 1806086 ~ 1841270 (-)
G299571 NA non-coding upstream 218511 1893007 ~ 1893710 (-)
G299493 NA non-coding upstream 237182 1911678 ~ 1912740 (-)
G299489 NA non-coding upstream 252172 1926668 ~ 1975954 (-)
G299107 NA other downstream 542990 1126738 ~ 1126798 (-)
G299173 NA other downstream 901909 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 1073159 587765 ~ 596739 (-)
G298872 NA other downstream 1133478 535023 ~ 536310 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 689835 2364331 ~ 2373059 (-)
G299598 NA other upstream 1191186 2865682 ~ 2868103 (-)

Expression


Co-expression Network