CI01000086_01909580_01912644


Basic Information

Item Value
gene id CI01000086_01909580_01912644
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1909580 ~ 1913685 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01909580_01912644.mRNA
CAGCGTGTGACATGTACAGACACGAGATATTCAGAAGCTGTGGAGGCCCTGATATCCATGAACATTGACTGGGAGGCCAGAAATGTCCAGAAGAGGGAATTTCGCCCCTTGACACCTTCCTCTGATGCCTGTGAGGATTCAGTGTTTTCAGTCACTGCTGATTTCCACCAGTCGTCCTTTGTGAATGAGACAGAGGCAGTGTCGTGCATAACTCCACCGTACAGTCCCGACTGTGACCAACACCAGGGGTCAGGGGTCACCAGATCTCAAGCCATCAGTGTGATCCGCCACACATCAGATGCACTGAGTCAGAGCGCCAGTGACTCAGCAATAAACCTTCAGCCTCTCAGATCTGATCCCCCATCAGCCCCTGCTGCAATGGTGTCCGATTCTTCTTCTGGAAGCATGCCATCAGTTTTCCAGACGCTTCCACTCACTCAATCCTTTGCTGGTTCGACAAACGTTTGTCAAGCGTCTGTTGTTTTTGTGGCCGGTGTGATGGCCAAAGGTTCAGTCGTGGTAATTCTGCCCCCTAAACAAACACCTTCATGTGGTTTGAAGTTTACGGCCATCGCTCCTGCTCCCGTCCACAACTCATCCACAAACAGACCTGTGTCTGAAGCCGCTCCATCGCGGACTCGCAACCATGTCTGCACTCACCCGCACTGTGGGAAAACATACTTCAAAAGCTCCCACCTGAAAGCACACCTGAGGACACACACAGGTGAGAAGCCGTTCAGGTGCTGCTGGGACGGCTGCTTAAAGCGCTTTGCCAGATCTGATGAACTGTCACGTCATCGCCGCACACACACGGGAGAGAAGCGCTTTGCTTGCCCCGTTTGCCACAGTCGATTTGTGCGTAGCGACCACTTGGCAAAACACGCACGCCGCCATCTAACAGCCAAGAGAACACCAGTGTGGCAGGAGGAGGTTTGCCATCTGAACAACATCACCACTTTCAGTCGCAACCTGCAGCCTTTGGCTCCCAAGACTGAGAGCTGACAGACTGAAACAAGGATACGTCCTTATGTATCCATCTGTACTATATTTTAAATTGTTTATATCTCACACACACACACACACTACCATTCAAAAGTTGGAATAATTATGATTTTTTTTTTTAATGTCTCTTCTGGTCACCAAGGCTGCATTTATTTTTTTTCAAAAATCAGTAATATTATGAAATATTACCATTTAAAAGAACTTTTTTTTTCTTTTTTTTTAAATGCAATTTATTCCTGTGATCAAAGCTGAATTTTTAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATTCTTTAAAAACATTTAAAAACCACTAGACATTTGTCTTAACTTTTGCAAAGTTTAATCACATGCCTGTTTTCAAAATTTGAAAGTTTTGATTACTAGAAATGTGTGACCCTGGACCACAAAACCAGTCATAAGTCGCACAGGTATATTTGTAGCAATAGCCAACAATACATTGTATGTGTCAAAATTATTGATTTTTCTTTTATGCCAAAAATCATTAGGATATTAAGTAAAGATCATGATCCATGAAGATATTTTGTAAATTTCCTACCATAAATATATATTAAAAAAATTTATTTTTGTAAGTGGATATGCATTGCTAAGAACTTCATTTGGACAACTTTAAAGGCGATTTTCTCAATATTTAGATTTTTTTGCACCCTCAGATTCCAGATTTTCAAATATTGTCCTAACAAACCATACATCAATGGAAAGCTTATTTATTCAGCTTTCAGATGATGTATAAATCTCAATTAAAAAAAAAAAAAAAAAAAAAAAGACCCTTATGACCGGTTTTGTGGTCCAGGGTCACATATAGCAGCAAGAGACACAACTCATCTATATTTTACTATATTACAAGAATATTTTGTTTAGTAACATTTTACAGTAAGGTTACATTTAACTACATTAGTTAACATACTTCTAGAGAATTTATTAATGTTAGTTAATAAGTGATTTCCAGGCTTAGTTAATAAGTGGTTTTAGTTAATGCATTAACAGGACTTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01909580_01912644.mRNA True 2043 mRNA 0.40 3 1909580 1913685

Neighbor

gene id symbol gene type direction distance location
CI01000086_01847624_01849735 NA coding upstream 59666 1846841 ~ 1849914 (+)
CI01000086_01838372_01840689 FABP10A coding upstream 68877 1838272 ~ 1840703 (+)
CI01000086_01779573_01833077 MYOM3 coding upstream 76503 1779573 ~ 1833077 (+)
CI01000086_01721518_01734414 NA coding upstream 174870 1721518 ~ 1734710 (+)
CI01000086_01630097_01641734 MAN1C1 coding upstream 267711 1630097 ~ 1641869 (+)
CI01000086_01984915_01990542 NA coding downstream 71230 1984915 ~ 1991154 (+)
CI01000086_02013500_02015770 NA coding downstream 99283 2012968 ~ 2016050 (+)
CI01000086_02045752_02053397 TRIP13 coding downstream 132067 2045752 ~ 2053710 (+)
CI01000086_02067516_02068077 NA coding downstream 152478 2066163 ~ 2070185 (+)
CI01000086_02104570_02112682 NA coding downstream 190885 2104570 ~ 2112808 (+)
G298565 NA non-coding upstream 10899 1894901 ~ 1898681 (+)
G298559 NA non-coding upstream 30143 1878274 ~ 1879437 (+)
G298520 NA non-coding upstream 41550 1865275 ~ 1868030 (+)
G298557 NA non-coding upstream 67449 1841618 ~ 1842131 (+)
G298546 NA non-coding upstream 105688 1802862 ~ 1803892 (+)
G298574 NA non-coding downstream 23923 1937608 ~ 1939310 (+)
G298602 NA non-coding downstream 51368 1965053 ~ 1983646 (+)
G298642 NA non-coding downstream 104868 2018553 ~ 2019317 (+)
G298601 NA non-coding downstream 148531 2062216 ~ 2064301 (+)
G298656 NA non-coding downstream 200198 2113883 ~ 2114169 (+)
G298529 NA other upstream 28127 1876890 ~ 1881453 (+)
G298381 NA other upstream 732664 1172156 ~ 1176916 (+)
CI01000086_01150842_01165271 DHDDS other upstream 743658 1150842 ~ 1165922 (+)
G298366 NA other upstream 761713 1136660 ~ 1147867 (+)
G298208 NA other upstream 929470 947191 ~ 980110 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 893898 2806368 ~ 2845762 (+)

Expression


Co-expression Network