CI01000086_01948087_01983560 (SPIRE1)


Basic Information

Item Value
gene id CI01000086_01948087_01983560
gene name SPIRE1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1948007 ~ 1983560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01948087_01983560.mRNA
ATGGCTCGCAGGAGAGATGATGATGATGAAGATGACGGACACAAGCTGATAGAGGAGGATGATGATGCGCATCCCATCATGAACAGTGAGGATGAAGATGCACTGTCTCTGGACGAGATTTTACATCTATACAAGCAGCCCATCAACGAGGAGCAGGCGTGGGCTGTGTGTTACCAGTGCTGTCGCTCTTTTTTGGAGGACAAGGACGGTTCCAGAGGCTCTGCTGGTGCCGGAGGACCGGGAGATGTGAGGATTTATAAAGACGGAGCGGTGCGGTTACATTCTGGAGACCGATCAGGTGTGCGTAATCCCATCCGATCATCAACACAGCTGATCGAGTCTCTGGGCATCATGATCTATAAGGCTCTGGATTACGGCCTGAAAGAGAACGAGGAGCGAGAGCTGAGCCCGCCGCTCGAGCAGCTCATCGACCTCATGACCAATGTGGGCGACACAGAGAGCGACTCCTGCCCCGATGAAGGCTACGCCGCCACTGAGGAAGAGGAGGATGACCAGGAGGGGAATCCCACCCACCCCTGCCGTATCCGTGGATTCCGTGACATCATCAAGCTGTGCACCCTTCACCTGGCCACCCCAGCGGATGCGCCCAATCACTACCAGGCCGTGTGTCGAGCTCTTTACGCCGAAACCAAAGAGCTCCGCACCTTCCTGGAGAAGATCAAGAGTGCAAAAGAGAACCTGCGTAAGATGGAGGGAGACACCGTTGACGAACCTGGCAGGGAGCTAAACGAGCTGCAGAATGCTGATTGGACGTGGCTCTGGGTGCAGTTGATGCGAGATCTGAGGAACGGTGTGAAGTTGCAGAAGGTGCAGGAACGGCAGTATAACCCGCTGCCAATCGAGTTCCAGCTCACGCCGTACGAGATGCTCATGGATGACATCCGCTCCAAACGCTACAAGCTACGCAAGGTCATGGTGAATGGAGATATTCCACCCAAGTTAAAGAAGAGCGCTCATGAGGTCATACTTGACTTTATCAGGTCCAGACCCCCCCTCAACCCTGTGGCAGCACGAAAGCTCAAGCCGCAGGCCGAACGTCCTCCCAGTCTGCATGAGCGTATTCTGGAGGAGATCAAATCAGAGAGGAAACTGAGGCCCGTGTCACCCGATCAGATCCGTAGAAGTAGATTTGCCATTCGGCCTCTTAGCATGTCTCAGAGTTTTGATTCATCAGATGTGTCATCCTCTGATGGGGCGCGGAAGGCCTCCAGCACGCTGTCGTTGGCCAATGGAGTGTCGCTTCAGCAGAAAGGTTCTGGCGGGTTTCAGAGGAAAAGGCTTAAAGCACCGACACTGGCTGAACTGGACAGCTCCGATTCAGACGATGAGACCGTAGGTCAAAGGTCGGCCAGCTGCTCCAGCATCTCTACATCCATGGTGGATGACACATCACCAGAATCTGTCCTGGGCAAGAAAACTCCACCCATGTTCCTGCCCATCTCGTCCACACCACAGCCGGAGCGCCGCCAGCCCACCCAGCGCCGTCACTCTATCGAGAAGGAAACGCCCACTAGTGTGCGCCAGTTCCTGCCTCCCTCCAGGCACAGTTCAAAATCCTTATGGCTTCAATATCCCAGAAATGCCCTGCACACCATGTTTCTCTTTGGTATTGTGGCTCTGGAGAGGCCGATGGGCGGCATTGCTGCTGTAGTTTTGTCTCTGGTAATGTGTGGCCAATGTTTTGGACAGGAGGAGTTTTGTTTCCCGGTGGAGTGTCTGGCTCTGACGGTGGAGGAAGTGATGCACATTCGGCAGGTTTTGGTCAAAGCTGAACTGGAGAAGTTTCAGCAGTACAAAGACGTCTACAATGCCCTGAAGAAGGGGAAGCTGTGCTTCTGCTGCCGAACGAAACGATTTTCCTTCTTTACCTGGTCCTACACCTGTCAGTTTTGTAAAAGGCCTGTGTGTTCACAATGCTGTAAAAAAATGCGGCTGCCATCGAAGCCATACGCTAGCCTACCCATTTACTCTCTGGGTCCATCCACGTCCACGCTGAAACGGGACAAGGCCGCCCACAAGCCAGAGAAGCCCAGCACGAGCCACCATCGACCCAGCCTTCAGCGCACAATGTCCAGATTATCTAAGAACACTCGGCAGTCGTCCTCATCTCAGGAGGAAATTGAGCTCCCGAAAGAGCTGATGGAAGACTGGAACGCCATGGAGGTTTGTGTCGACTGCAAGAAGTTCATCTCCGACATTATCGCCTCCAGCAAGCACAGCCTCTCTCTAGCCAACAAGCGTGCCCGCTTGAAACGCAAGACTCAGTCCTTCATCATGGCATCTGAGAAGGGCGCAGAATACGTGCCGTCGGAGAGAACCATCAAGGAGGTTTAGACGCGGATCACGCCGTATGTCATCCTGTTGTAGTTGTATAGATTAGAACTGGTCAAGCCGTGTTGTACAGAGCCAATAAA

Function

symbol description
spire1 Predicted to enable actin binding activity. Involved in cytoskeleton organization; positive regulation of double-strand break repair; and positive regulation of mitochondrial fission. Located in cytosol and nucleoplasm. Is integral component of mitochondrial outer membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01948087_01983560.mRNA True 2435 mRNA 0.54 17 1948007 1983560

Neighbor

gene id symbol gene type direction distance location
CI01000086_01915013_01921794 AZIN1A coding downstream 26213 1915013 ~ 1921794 (-)
CI01000086_01852638_01897719 UBR5 coding downstream 50288 1852146 ~ 1897719 (-)
CI01000086_01670242_01672517 NA coding downstream 273511 1669788 ~ 1674496 (-)
CI01000086_01313364_01320865 NA coding downstream 625993 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 649948 1295830 ~ 1298059 (-)
CI01000086_01994840_02008387 TPPP coding upstream 11035 1994595 ~ 2008387 (-)
CI01000086_02018950_02030464 NA coding upstream 35260 2018820 ~ 2030525 (-)
CI01000086_02032793_02044182 BRD9 coding upstream 49152 2032712 ~ 2044182 (-)
CI01000086_02192695_02193522 NA coding upstream 209075 2192635 ~ 2193766 (-)
CI01000086_02366362_02373059 SLC6A20 coding upstream 382708 2364331 ~ 2373059 (-)
G299493 NA non-coding downstream 35267 1911678 ~ 1912740 (-)
G299571 NA non-coding downstream 54297 1893007 ~ 1893710 (-)
G299478 NA non-coding downstream 106737 1806086 ~ 1841270 (-)
G299560 NA non-coding downstream 144115 1802861 ~ 1803892 (-)
G299529 NA non-coding downstream 253098 1668012 ~ 1694909 (-)
G299494 NA non-coding upstream 5466 1989026 ~ 2004100 (-)
G299581 NA non-coding upstream 28300 2011860 ~ 2076479 (-)
G299488 NA non-coding upstream 69747 2053307 ~ 2054269 (-)
G299589 NA non-coding upstream 78658 2062218 ~ 2063338 (-)
G299625 NA non-coding upstream 105554 2089114 ~ 2089377 (-)
G299528 NA other downstream 252830 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 686770 1257926 ~ 1260025 (-)
G299107 NA other downstream 821209 1126738 ~ 1126798 (-)
G299173 NA other downstream 1180128 765617 ~ 767879 (-)
G299598 NA other upstream 882122 2865682 ~ 2868103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011095 spire1b coding NC_007127.7 CM002900.2 52786644 ~ 52821023 (-)