CI01000086_01984915_01990542


Basic Information

Item Value
gene id CI01000086_01984915_01990542
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1984915 ~ 1991154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01984915_01990542.mRNA
ATGGCGGTAGAAGGTTTGACCATAACAGAGCAATGGATCAGAGAGAAACTGAACCTTCAACACAGTTGCTTAGCGGACGTCCGATCATTGACTCTTCCAGGAACATATGAAGGGAAAATCTGTCACTTAGGAACATCCCTAAAAAACTTTGTGCGTCTGAAAACACTGGATCTTTCACATAATGCACTGGTTACAGTTCAGGGGATTGAGCATTTGGAAATGCTGGAGAGACTGAATCTGTACTACAACAGACTGGCGTCTCTACAGGACGTCTTTTCCCTGCACAAGCTGCAGAATTTAAAGGAACTGGACTTACGGCTGAATCCTGTGGTCAAGAGACACCCGCACTACCGTTTGTACTTGGTCCATGCAATGACCAAACTCCGCAAGCTTGATGACCGTCCAGTGCGAGACAGAGAAAGAAAGGCTGCTCTCATGCATTTCTCATCAGAGTCAAATCTAGACACTAATCATAAGAAACATGTCTTAATACAAGACACAACTTGCAGAAGTAGTGAGCTCAGATTAAAAGCAATGCAGAAGATGATGAAGACGCTCTCGCTTCTAGAGGGGAATGAGGAAGTTGCACTCAATGACGTTTCTAGCAAGAGACCTCAAACTGTCTCTGTCCGGTCTGAGAACAAATGCAGCCCTCATCTGTTACAGGAGGCTTCCGTTCGTTCTCATAGAGTCACGTTTGTGAGCCCCATCATGGAGAGCCGTCATTCGGTCAGGAGTGTGACTCACGGTACAGTTCGAGGAGAACACGTCTTTACACCACATCCTACAGACACACGGTCCGCTTCACAGGGACATGATTGCACAGCCATTAAATGGCGAAACCAACATCAAGACAGAGCAAATCCAGTCTTGCATCCTCCCAGATTAACTTACCAGAACACAGGAACCTCAGATAGAAGCCCATCGGTATCAGAGAGAAGACGCAAACCACAGAAGGGCGCCTACAGGAAGCCCATGGAGTTGCTCCTCAGCATGATGGAGGAGCTCTGGTCTGGGAAGGAGGAGAATCAACAAAATAGGACGTTCCTCATGAAGATGGTTCAGATCCTCAGCATGATGGAGCAGGATGTTGTGGGAGGAGAACAGGAGATCCAAACTCTTAAAGAGACTCTCAAAGCCTTGAACGCTCGGAATGAACTACAGGAAAAACAACATCAGTCTGAGATTGAAGATCTCACACTTCAGCTTCAGCAGACGCAGGAGTCTATCACAGCCCTTAATGAGCAGCTGAAGAATGTGTTGGAAGAAAATGTGTCTTTACAGAAACAGCTTATCAGAGCAGAAAAGAAGCTGCTGTCCTCTCATCTGAAGAAAACCCCAAACATGGAGAGCAGAAGAGAACAGTCAGTCCCTGAGGATTTGAACGTGAAAAGACACACGATTCAAGAGGGAAACGGAGCGAATGAGCAGCAAGAGAGCTACAGGACTTTGATAGCCAGAAATGAGCGTTTGCTGCAGCAGTTGGAAGAGGCTCTAATGAGCTGATTGGTGCAAATGCTTCCAGTAGACAGTGTGACATCTGCATTTAAAGAGAAAGTTTTAATTTATTATAAATCTGGCCTTTAAAAGATGTAAAAGCCTTTTGTTTTATAGACAGTCTCAACATGTTCACATGTTCTCTGTTTATTCCTACATCCGAGAATCAATCACATATTCACATCTTGATCTTATGCAAATGTGTTTGTTCGACCAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTGTTTATTCCTACATCCGAGAATCAATCACATATTCACATCTTGATCTTATGCAAATGTGTTTGTTCGACCAGAGATAATATTCAAGGCAAGTTTTCTGTACAGACAGAGCTTTCATGTGGATAAATGAA

Function

NR:

description
LOC553488 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01984915_01990542.mRNA True 2118 mRNA 0.39 12 1984915 1991154

Neighbor

gene id symbol gene type direction distance location
CI01000086_01909580_01912644 NA coding upstream 71230 1909580 ~ 1913685 (+)
CI01000086_01847624_01849735 NA coding upstream 135001 1846841 ~ 1849914 (+)
CI01000086_01838372_01840689 FABP10A coding upstream 144212 1838272 ~ 1840703 (+)
CI01000086_01779573_01833077 MYOM3 coding upstream 151838 1779573 ~ 1833077 (+)
CI01000086_01721518_01734414 NA coding upstream 250205 1721518 ~ 1734710 (+)
CI01000086_02013500_02015770 NA coding downstream 21814 2012968 ~ 2016050 (+)
CI01000086_02045752_02053397 TRIP13 coding downstream 54598 2045752 ~ 2053710 (+)
CI01000086_02067516_02068077 NA coding downstream 75009 2066163 ~ 2070185 (+)
CI01000086_02104570_02112682 NA coding downstream 113416 2104570 ~ 2112808 (+)
CI01000086_02152113_02180258 PLEKHG4B coding downstream 160959 2152113 ~ 2180258 (+)
G298602 NA non-coding upstream 1269 1965053 ~ 1983646 (+)
G298574 NA non-coding upstream 45605 1937608 ~ 1939310 (+)
G298565 NA non-coding upstream 86234 1894901 ~ 1898681 (+)
G298559 NA non-coding upstream 105478 1878274 ~ 1879437 (+)
G298520 NA non-coding upstream 116885 1865275 ~ 1868030 (+)
G298642 NA non-coding downstream 27399 2018553 ~ 2019317 (+)
G298601 NA non-coding downstream 71062 2062216 ~ 2064301 (+)
G298656 NA non-coding downstream 122729 2113883 ~ 2114169 (+)
G298611 NA non-coding downstream 261962 2253116 ~ 2321680 (+)
G298577 NA non-coding downstream 331742 2322896 ~ 2325725 (+)
G298529 NA other upstream 103462 1876890 ~ 1881453 (+)
G298381 NA other upstream 807999 1172156 ~ 1176916 (+)
CI01000086_01150842_01165271 DHDDS other upstream 818993 1150842 ~ 1165922 (+)
G298366 NA other upstream 837048 1136660 ~ 1147867 (+)
G298208 NA other upstream 1004805 947191 ~ 980110 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 816429 2806368 ~ 2845762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010307 cep72 coding NC_007127.7 CM002900.2 52847079 ~ 52864785 (+)