CI01000086_02032793_02044182 (BRD9)


Basic Information

Item Value
gene id CI01000086_02032793_02044182
gene name BRD9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2032712 ~ 2044182 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02032793_02044182.mRNA
ACTATGAGGACAAACCCCTTGATAAACCCCTGAAGCTGGTACTCAAGGAGGAGAAAAAGAAAAAACGTGAGCGAGAGCAGTCAGAAAATGCCGCCAGTGCACCAGTGGAACCATTCACCCTGCCGAAACCTGTGGAGGTGGTTCCAGAGGAGAAGAAGAGGAAGCGGGACAAATTTGAATCGGAATCAGAGGCCGATGAATTTCATCCTGGAGTGAAAGTAGAAGTGGAGCAGCAAGCGGATCGACCCGTACGAGCCTGTCGAACTCAACAAGAAAACGAATCCACTCCTCGCCAGCAGCTCTTGGAGCACTTCCTGCGGTTACTTCAGAGGAAAGATCAACACGGATTCTTCGCCTTCCCTGTGACAGACGCCATTGCACCAGGCTACTCCATGATAATCAAACATCCCATGGACTTTAGCACGATGAAGGACAAAATTGCTGCAAACGAATACAAAACTATCACAGAATTCAAGGCAGACTTCAAGCTGATGTGTGACAATGCCATGGTTTACAACCGACCAGAGACAGTTTACTACAAAGCTGCTAAGAAACTTCTCCACACAGGATTCAAAATGATGAGCAAAGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCTTTTATGCAGGACATGGATTTCTCTCAGCAGGCTGCCATTTTGGGTGATGACGACATCACACCTGAGGAACCGGTGACGGAGATCATGCCAATCCACACGGAATACCCCAAAAAATCCAAAAAGCAGCCCGTCAAAGAGCCCATCATCAGTGATATGTATGAGCTAGAGGGCAACGCTTGCAGTTTGACGGACAGCACGGCAGAGGAGCACGTATTGGCACTGGTGGAGCACGCGGCGGATGAAGCCAGGGATCGAATCAACCGTTTCATGCCAAACTCTAAGATTGGTTACCTTAAAAAGGACTCAGAGGGTTCCCTGATGTACAATGTTGTAAATCAAGATCCTGAAGCAGAGGAGGAAGAGACTCATCCTGTAGATTTGAGCTCTTTGGCAAATAAGCTCATACCTGGACTGACGTCACTGGGGTTTAAAGACGACAGGAGACACAAAGTGACGTTTTTGAGCAGTGCGTATAACACTCAGACCCTTCAGAACAACTCCATCTATCCTGACCTGCTTCCAGAGGAGATGGACATGCTTTACTCCGCTTATGGAGACGAGACCGGCGTCCAGTGCGCTCTCAGTCTGCAGGAGTTTGTTAAGGGTTGTGGGAGTTTTACCAAAAGGCTTGTAGATGATTTGCTGGATAAAATGACGGCTGGTGATCACTCGAAGGCTGTCATTCAAGTCCGACAGAAAAGAAACATGCCGATTGATGACGCTAAGGCTAGTTTATGTGGCATGCCGGGAACAGATGAAGCCGGCTCAGTCCTTGATTTCATGTCCATGAAGAGCTACCCAGACATGTCTCTAGATATGCTCAACACGTTAAGTAAATGTGTGAAGAAGGAGCCGGAGCATGAGGACGGTCATCAGCACTTTGACGACACAGCCAAACTCCTGCAGGAGTTCCAGGATGCAGCGGTGGACAGGGTCGGATCCCGACCGTCCTCCAATCTCTCTTCCCTGTCAAACGCTTCAGAGAGGGATCAGCATCATTTAGGAAGTTCACCTCATCTGGGTGTTGGAGATCAGACCGATATGGTCCAAGACCCGTATGAGTTCCTGCAGTCTCCAGAGCCCGGCTCCACCACTAACAGCTGATAGACCAACACACTGTAATTATGTGCTGTTATAAAGGACTGTAAGCTTGTACAGGTTCATGTTTTGTTGTTTTTAAATAAA

Function

symbol description
brd9 Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Is expressed in brain and liver. Orthologous to human BRD9 (bromodomain containing 9).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K11723 BRD7; bromodomain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02032793_02044182.mRNA True 1805 mRNA 0.48 16 2032712 2044182

Neighbor

gene id symbol gene type direction distance location
CI01000086_02018950_02030464 NA coding downstream 2187 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 24325 1994595 ~ 2008387 (-)
CI01000086_01948087_01983560 SPIRE1 coding downstream 49152 1948007 ~ 1983560 (-)
CI01000086_01915013_01921794 AZIN1A coding downstream 110918 1915013 ~ 1921794 (-)
CI01000086_01852638_01897719 UBR5 coding downstream 134993 1852146 ~ 1897719 (-)
CI01000086_02192695_02193522 NA coding upstream 148453 2192635 ~ 2193766 (-)
CI01000086_02366362_02373059 SLC6A20 coding upstream 322086 2364331 ~ 2373059 (-)
CI01000086_02400288_02400580 NA coding upstream 355676 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 358690 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 498186 2542368 ~ 2545808 (-)
G299494 NA non-coding downstream 28612 1989026 ~ 2004100 (-)
G299489 NA non-coding downstream 56758 1926668 ~ 1975954 (-)
G299493 NA non-coding downstream 119972 1911678 ~ 1912740 (-)
G299571 NA non-coding downstream 139002 1893007 ~ 1893710 (-)
G299478 NA non-coding downstream 191442 1806086 ~ 1841270 (-)
G299488 NA non-coding upstream 9125 2053307 ~ 2054269 (-)
G299589 NA non-coding upstream 18036 2062218 ~ 2063338 (-)
G299625 NA non-coding upstream 44932 2089114 ~ 2089377 (-)
G299626 NA non-coding upstream 46228 2090410 ~ 2090661 (-)
G299650 NA non-coding upstream 95114 2139296 ~ 2139624 (-)
G299528 NA other downstream 337535 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 771475 1257926 ~ 1260025 (-)
G299107 NA other downstream 905914 1126738 ~ 1126798 (-)
G299173 NA other downstream 1264833 765617 ~ 767879 (-)
G299598 NA other upstream 821500 2865682 ~ 2868103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location