CI01000086_02335074_02346679 (SACM1L.L, SACM1LB, SACM1L, SACM1LA)


Basic Information

Item Value
gene id CI01000086_02335074_02346679
gene name SACM1L.L, SACM1LB, SACM1L, SACM1LA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2335074 ~ 2346920 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02335074_02346679.mRNA
GCACGTATCTCATCGTCATTACAAAGAAGAAGAAAGTGGGTGACCTGTTTGGCCACACGGTCTGGAAGGCGGCTGAGTTTGACATCATTTCCTACAAGAAAACGGTTCTGCATCTGACTGATAATCAGATGCAAGACAACAAAGCCTTCCTGTCCATGATCAACAGCGTCCTGAATACAGATGGTTTCTACTTTGCCACGGACTATGACCTGACGCACACGCTACAGCGCCTGGCCAACACCAGCCCAGAGTTTCAGGAGATGACCTTACTGGAGCGGGCGGATCAGAGATTCGTGTGGAACGGTCACCTTCTCAGAGAATTCATGGCACAGCCTGAGCTACACAAATTCGTCTACCCGGTTGTTCACGGCTTCATCACTATGAAGTCATGCTGCATCAACGGTAAAATCTTTGACTGGATCATTGTTTCCAGGAGGAGCTGCTTCCGCGCTGGTGTTCGCTACTACGTCAGAGGTATCGACTCTGAGGGTCATGCAGCCAACTTTGTCGAGACAGAACAGATTGTTCAGTATAATGGAGGAAAAGCGTCATTTGTTCAGACTCGAGGCTCCATCCCGTTCTACTGGTCTCAGAGACCCAACCTCAAATACAAACCAAAACCACAGATCAGCAAAAGCATCAATCACCTGGATGGTTTTCAGAGACATTTTGACTCTCAGATCATCACATACGGCAAACAAGTGATTCTGAATCTGGTCAATCAGAAAGGCTCAGAAAAGCCACTGGAACAGGCCTTTGAAAAGATGGTGGGCAGTTTGGGCAATGGCATGATCAAGTACATCGCGTTTGACTTTCACAAGGAGTGCAGCCGTATGAGGTGGCATCGCCTGCAGATCCTGGTGGACATGGTGGCAGAAATGCAGGATGAGTTCGGCTACTTCCTGGTGGATTCAGATGGGACGGTCCAAATGCAGCAGGACGGGACGTTCCGAAGCAATTGCATGGACTGTTTGGACCGAACCAACGTCATCCAGAGTCTGCTGGCCCGTCGCTCGCTGCAGTCACAGTTAGAGAGGATGGGAGTTTTACATGTGGGGCAACGGATTGAAGATCAGGCAGATTTTGAAAAAATATACAAGAATGCATGGGCAGATAACGCCAATGCGTGTGCCAAACAGTATGCTGGCACGGGAGCCCTGAAGACTGATTTCACACGGACGGGAAAGAGAACCCAGTGGGGTTTGCTGATGGACGGATGGAACTCCATGATCAGATACTACAAGAACAACTTCTCAGATGGGTTCAGACAGGACTCCATTGACCTGTTCTTGGGGAACTATGCTGTGGAAGAGGCGGATATAAACACTCCTCTACATGAGCCCAAAGACTGGAAGTTCCTCACGCTGCCAATCATCATGGTGGTTGCTTTCTCAATGTGCATCATATGTCTCCTTATGGCTGGCGACACCTGGACGGAGACTCTGGCGTACGTGTTGTTCTGGGGCTCGGCGAGTGTTGTGACCGGCGGCGTGATCCTCTTCAACGGCCGGGACTTCGTCGACGCGCCCAAACTGTCCTGTCTTACTCTCAGCTTCACCGGGCCTGGAGCCTGTACTGACGCCACACGGCGAGGAGGAAGAGGACGAAGGCCGGGGGCCGGACGGGACCGAACGCGCATGGACGCACCCGCTGCTCTCCACACGGGAATCGTATCACGCGGGACCATCTCACAGAGATCCCATAATTCCATCTGCATATAGGCAGCTTTACAGGAGCAACGCTGGAAAATCAAGCACCTTATACTCGACCATGAGGTTCTCGGCCCCGTCCTCGTGGTTCACACGTCCCGAAGGCGTTTTTCATAGACACCCGTGTCTAAACGCACACGCCTGCCGATATCCCACCGGCTCTCATAAGTCGCAGCTCTCGGACTGTTTGTGTAAAACCAAACGCATTTGTATCGCATCTGCCGTCACCTCAAAATCATTGTCTTGTTTTCTA

Function

symbol description
sacm1lb Predicted to enable phosphatidylinositol-4-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-plasma membrane contact site. Predicted to be active in endoplasmic reticulum. Orthologous to human SACM1L (SAC1 like phosphatidylinositide phosphatase).
sacm1la Predicted to enable phosphatidylinositol-4-phosphate phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-plasma membrane contact site. Predicted to be active in endoplasmic reticulum. Orthologous to human SACM1L (SAC1 like phosphatidylinositide phosphatase).
sacm1l Enables phosphatidylinositol-4-phosphate phosphatase activity. Involved in phosphatidylinositol dephosphorylation. Located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-plasma membrane contact site.

GO:      GO:0008969, GO:0016791, GO:0005783, GO:0008330, GO:0043726, GO:0016312, GO:0005789, GO:0042578, GO:0043812, GO:0043813, GO:0017161, GO:0008579, GO:0016021, GO:0016020, GO:0030487, GO:0052830, GO:0046856, GO:0052831, GO:0016787, GO:0008138, GO:0017017, GO:0030351, GO:0030352, GO:1990003, GO:0052867, GO:0052829, GO:0052828, GO:0052629, GO:0052825, GO:0052745, GO:0019178, GO:0019198

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02335074_02346679.mRNA True 1962 mRNA 0.51 18 2335074 2346920

Neighbor

gene id symbol gene type direction distance location
CI01000086_02310487_02314131 RBM24B, RBM24 coding upstream 20927 2309348 ~ 2314147 (+)
CI01000086_02266795_02305843 KIF13A coding upstream 29085 2266795 ~ 2305989 (+)
CI01000086_02226264_02227472 NA coding upstream 107449 2225543 ~ 2227625 (+)
CI01000086_02203506_02218668 PTDSS1B, PTDSS1, PTDSS1A coding upstream 116389 2203023 ~ 2218685 (+)
CI01000086_02152113_02180258 PLEKHG4B coding upstream 154816 2152113 ~ 2180258 (+)
CI01000086_02381193_02384764 NA coding downstream 34273 2381193 ~ 2385128 (+)
CI01000086_02387094_02397102 NOD1 coding downstream 40174 2387094 ~ 2397145 (+)
CI01000086_02741241_02763692 XRCC1 coding downstream 393736 2740656 ~ 2764358 (+)
CI01000086_02773589_02785090 DRD2L coding downstream 426669 2773589 ~ 2785122 (+)
CI01000086_02790491_02793665 NA coding downstream 443571 2790491 ~ 2794239 (+)
G298596 NA non-coding upstream 3315 2330579 ~ 2331759 (+)
G298577 NA non-coding upstream 9349 2322896 ~ 2325725 (+)
G298611 NA non-coding upstream 13394 2253116 ~ 2321680 (+)
G298656 NA non-coding upstream 220905 2113883 ~ 2114169 (+)
G298601 NA non-coding upstream 270773 2062216 ~ 2064301 (+)
G298676 NA non-coding downstream 68462 2415382 ~ 2417816 (+)
G298694 NA non-coding downstream 110403 2457323 ~ 2457531 (+)
G298706 NA non-coding downstream 199796 2546716 ~ 2549968 (+)
G298743 NA non-coding downstream 263646 2610566 ~ 2610887 (+)
G298744 NA non-coding downstream 266073 2612993 ~ 2693507 (+)
G298529 NA other upstream 453621 1876890 ~ 1881453 (+)
G298381 NA other upstream 1158158 1172156 ~ 1176916 (+)
CI01000086_01150842_01165271 DHDDS other upstream 1169152 1150842 ~ 1165922 (+)
G298366 NA other upstream 1187207 1136660 ~ 1147867 (+)
G298208 NA other upstream 1354964 947191 ~ 980110 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 460663 2806368 ~ 2845762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010326 sacm1lb coding NC_007127.7 CM002900.2 53603945 ~ 53633569 (+)
bowfin (Amia calva) AMCG00002495 sacm1lb,LOC106579366,LOC106605518 coding CM030136.1 CM030136.1 16937361 ~ 16956570 (+)