CI01000086_02366362_02373059 (SLC6A20)


Basic Information

Item Value
gene id CI01000086_02366362_02373059
gene name SLC6A20
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2364331 ~ 2373059 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02366362_02373059.mRNA
GACATTATCATCATCATCATCATGAGCAAGGAAGCCCGTCCGTCCTGGGACAGTCCTATGCAGTTTGTCCTGGCATGTGTGTCTTATGCAGTGGGACTTGGGAATGTCTGGCGTTTTCCGTATCTCTGCCAAATGCATGGAGGAGCTACGTTTCCATATGTGGTTCTGATCATCTATCTGATCCGTGGTGTGACTCTTCATGGAGCCTGGAACGGAGTGAAGTACATGTTCACGCCCAAGCTGGAGCAGCTGGCAAACCCTCAAACATGGATCAACGCTGCCACTCAGATCTTCTTCTCTCTGGGTTTGGGCTTCGGCTCTTTGATCGCTTTCGCCAGTTACAACCACCACAACAATAACTTTGAGAGGCAGGCCGTCGTCGTGTCACTCATCAACAGCTGCACGTCTGTGTTCGCCAGCATCGTGACCTTCTCCATCTACGGCTTTAAAGCCACGTTCAACTACGAAAGCTGTTTGGAAAGAATGAATGATCGTTCTCTCATTATTCCATCAAACATTAAACTGAATGTTGGCAGTCTGTTCATTTTACGATCTCTTGGCTTTTCACAGAATGTTTTAGGACATTAAACTGCCATCTATGGAGAATCATCCATCGATTATTAACAGAACTAAATGGAAAGAGAAGACCATGTTATGAAATCTGCACTGCAATTGCAAAAAA

Function

symbol description
slc6a20 Enables L-proline transmembrane transporter activity. Involved in L-proline import across plasma membrane and glycine transport. Part of apical plasma membrane. Implicated in iminoglycinuria.

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02366362_02373059.mRNA False 682 mRNA 0.46 4 2366268 2373059

Neighbor

gene id symbol gene type direction distance location
CI01000086_02192695_02193522 NA coding downstream 172502 2192635 ~ 2193766 (-)
CI01000086_02032793_02044182 BRD9 coding downstream 322086 2032712 ~ 2044182 (-)
CI01000086_02018950_02030464 NA coding downstream 335743 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 357881 1994595 ~ 2008387 (-)
CI01000086_01948087_01983560 SPIRE1 coding downstream 382708 1948007 ~ 1983560 (-)
CI01000086_02400288_02400580 NA coding upstream 26799 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 29813 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 169309 2542368 ~ 2545808 (-)
CI01000086_02610598_02642920 CDK14 coding upstream 237508 2610567 ~ 2642920 (-)
CI01000086_02886112_02888612 KDF1A coding upstream 512388 2885447 ~ 2890213 (-)
G299616 NA non-coding downstream 14985 2346302 ~ 2351283 (-)
G299718 NA non-coding downstream 32026 2334009 ~ 2334242 (-)
G299717 NA non-coding downstream 32728 2333275 ~ 2333540 (-)
G299716 NA non-coding downstream 33118 2332914 ~ 2333150 (-)
G299711 NA non-coding downstream 43473 2321826 ~ 2322795 (-)
G299606 NA non-coding upstream 7976 2381035 ~ 2385164 (-)
G299734 NA non-coding upstream 84068 2457127 ~ 2457340 (-)
G299739 NA non-coding upstream 90442 2463501 ~ 2463712 (-)
G299765 NA non-coding upstream 128073 2501132 ~ 2501412 (-)
G299766 NA non-coding upstream 128369 2501428 ~ 2501664 (-)
CI01000086_01852638_01897719 UBR5 other downstream 462849 1852146 ~ 1897719 (-)
G299528 NA other downstream 671091 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1105031 1257926 ~ 1260025 (-)
G299107 NA other downstream 1239470 1126738 ~ 1126798 (-)
G299173 NA other downstream 1598389 765617 ~ 767879 (-)
G299598 NA other upstream 492623 2865682 ~ 2868103 (-)
CI01000086_02893723_02895660 NA coding upstream 438856 2893421 ~ 2895833 (-)
CI01000086_02897831_02901375 TMEM222, TMEM222A, TMEM222B coding upstream 443239 2897804 ~ 2901375 (-)
G299770 NA non-coding upstream 51625 2506190 ~ 2511270 (-)

Expression


Co-expression Network