CI01000086_02741241_02763692 (XRCC1)


Basic Information

Item Value
gene id CI01000086_02741241_02763692
gene name XRCC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2740656 ~ 2764358 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02741241_02763692.mRNA
ATATATATTGCAAGATATTAACTGTTTTCAAGTCTGTCTCTTTGAGATAAAGATTGAGTTGATGTCTTAAATAATTTTGTATTTTTATGAGGCCATCATGCATTTGTCAAATATTTGAGTAGAATATGATGAAATATATCGTAGGTTAGATAACAGTAAAAATGAGGCGACTTTTGTGGCATTATTATTCTGTGCATTAGTTAATATCTGACCCTAGTAATCACAATATTTATATATTACTCTTGTGTAGATTAAAAGACATTTGATGTCTGATTTGTGATCGAATGATTCTTTTGAGTCGATTCACAGATCGAGTGCTTCATTAGCGAATCAGTCTTAACGATAATTATATATATATATATATAATAACTCTTATCCAGCAATCACAAACAACTGGAGAAAGGTGGAAAAAGTCACGACAATTCATTGCTCAGAATTTATTATAGATCATAGTGTTATGCAGGTCTGCTGCATCTTTACACTTTCTATTACGTTTATAATTTTCACTATTAATGAATATTAAATGAAAATAATTTTGTTGTACAGTGTTTTCAGGTTTTATGAGACCAGAGACGAGTGTTGAACATGCCTGAAATCAAACTTAAGCATATTGTGTCTTGCAGCAGTGAGGACAATACTCACAAGGCAGACAACCTCTTGAGCTCCGACACGTACAGGAAATGGAAAGCTGCAAGACCTGGAGAGAAGCAAGTTTCAGTTATTCTTCAATTGGAAAAGGAAGAGCAAATTCACAGCATAGACATTGGAAATGAAGGCTCTGCTTTCATTGAGGTCCTTGTTGGACACTCCACATCAGTCAAAGATCAAGACTTTGAGGTTCTGTTGGTCACGTCGTCCTTCATGTCACCCACAGAGAGCCGTAACGGCACAAACACAAACCGAGTGCGCTTCTTCGGACCTACCCAGCTGGTGAAGGGCACGGCGCAGGAGAAGTGGGACCGCGTGAAGATTGTGTGCAGTCAGCCTTACAGCAAGTCAATAGCGTATGGAATCACCTTTATAAAGCTGCATTCTCCTCCAGACGATAATGATGCTCCCATCACGACTCCACCGAAACTAACTAAACTGGGTCAGTTCCGTGTTAAAGATGAATCCCCTTCTTCTGGCTCAAATATCCAGCCGGGAAGTCTGTTCTTTAGCAGAGAGAGCACTGCTAAATCCAGCGCAGGACTGAAAGTGTCTCCTCAGAATGACAGGTTGAGTTACGCCGCTGCTGCTTTGAAGTCCGACGGTTCGTCCACACATTCGTCTTCCAGCAGCACCAGCACACAACAGGCTCCTGTGAAGAGGAAGTTTGAGTTTAGTAAAGAGCGTCTGGAAGCCGCAGGTCCACCACCCAAAAAGCCCAGTTCATCTGCCTCTGCTGAATCAAACTCTGCCACCCCAAAATCTAAAACAAAAACCAGTGCAACTGCAAGTCCCATCTCCACCGAACCGGTTGCTTTCAACCGCATCATGGAGGGAGTCGTGTTTGTCCTGAGTGGCTTCCAGAACCCCTTCCGCGCAGAGCTGCGAGACAAAGCCCTGGCCATGGGAGCCAGATACAGACCCGACTGGACTCCAGACTCCACACACCTCATCTGTGCGTTTGCCAACACTCCTAAGTACAGTCAGGTGAAAGCGGCCGGAGGCATTATCGTCAGGAAGGAGTGGGTGATGGACTGTCACAAGACAAAGCAGAAGATTTCCTGCAAACGGTATCTCATGGATGGAGCCGAGTCCAGTTCGGAGAGTGAAGCAGAACAGGATGAGAGTGAGGAGGAAATGCAGAAAACGAAAACACCAGAAAAGAGGCATGTGACCCCAAAAAAGCAGCCGATTAAGGAAGAAGAGGAGGATTATGGTGGTTCAACAGATGCGGAAGGCCCAGCAATGATGTGTCACCGTTCTCCTCCATCAAAATCAATAATGGTAATTTTGAAAGATTTATTGATGCTGCCGTCTACGTCACCTTCAGAAGCTCAGCTGCCTGAACACGGCAGAACAGATGATGACACGTCTGGCATGGATACTGAAGATGAGCTGAACAGGGTGGAGATGGAGAGCAGGAGGAAAAAAGCAGTGAAGGAAAGCGCAGGTGTGGTGAAAGATGAAGATCCGTACGGCGGCTCTACAGATGAGAACACGGATGCTGAGGAAGAGGAGGATAAACCCATCCCTGAACTGCCAGACTTCCTAACAGGGAAGCGCTTCTATCTCTACGGCAAGTTCCCGGACAACCAAAAAAGGCAACTTCAGCGCTACATCATCGCCTTCAACGGAGCTGTTGAAGACTATATGAGCGAGAAGGTCCAGTTTGTCATCACCAGTGAGGGATGGGATGAATCTTTTGAGGATGCCTTGATGGAAAATGGAAGTCTGAGCTTTGTGAAGCCTTCGTGGATTTTCGCCATCAATGACAGGCAGAAAATGTTGCCGTACCAGCCCTACACTGTAGTCCCTTAAGAGATTATTAAACGTCGTCTTGCTCTTTGAGAGGATATCCATCAATCCCAGCCTTGACCTGAGCAGACCTTGCTCATCTTAGGGAAATAGTTCAACCCATAAATTGTTTACTCACCTTCATGTCGTTCCAAACCTCTGACTTTTCACTGTTGATCTTTTTTGTTTCGCAAAAAGCAGCTCAGACATTCTGTTAAACATCTTTTCTGTTCTACACAAGAAAGTCGTACGGGTTTGGAAGGACATATGAATGAGTAAATTATGAATTTTAATTTTTGGGGTTGAACATTAATAGGCTGTATCTGTCAGGTCTTTGTTCTGATGTTGAAAAAATGGACTAGATACCAACCTGCCAACCCAGAGATAAAAGACTCTGATCCATATTCATGATCTGTTTTACCAGCGATCCAAAAGCTGTTTATGAAGCTGTTAATTTTTAATTACTAAAGACTGAACCTGAATTCCCTTTTGAATCTGACTTATGCAGAACATACTCATTTAATATGTATGTTCACATATATGGTCAATTATTGATTAGATGATCCATATTCATTTTTGTTCAACATCTGTAGGTGTGGTCTTCAGAATTAATATTACAATAATATTGCTTATGTTTAGAGCTCTTTGATGAATATTCAAACAACCATATTTAAGAAAAAAGCACCTGAA

Function

symbol description
xrcc1 Predicted to enable damaged DNA binding activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within single strand break repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including autosomal recessive spinocerebellar ataxia 26; carcinoma (multiple); hematologic cancer (multiple); hepatitis A; and reproductive organ cancer (multiple). Orthologous to human XRCC1 (X-ray repair cross complementing 1).

GO:

id name namespace
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10803 XRCC1; DNA-repair protein XRCC1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02741241_02763692.mRNA True 3132 mRNA 0.43 18 2740656 2764358

Neighbor

gene id symbol gene type direction distance location
CI01000086_02387094_02397102 NOD1 coding upstream 343511 2387094 ~ 2397145 (+)
CI01000086_02381193_02384764 NA coding upstream 355528 2381193 ~ 2385128 (+)
CI01000086_02335074_02346679 SACM1L.L, SACM1LB, SACM1L, SACM1LA coding upstream 393736 2335074 ~ 2346920 (+)
CI01000086_02310487_02314131 RBM24B, RBM24 coding upstream 426509 2309348 ~ 2314147 (+)
CI01000086_02266795_02305843 KIF13A coding upstream 434667 2266795 ~ 2305989 (+)
CI01000086_02773589_02785090 DRD2L coding downstream 9231 2773589 ~ 2785122 (+)
CI01000086_02790491_02793665 NA coding downstream 26133 2790491 ~ 2794239 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 coding downstream 42010 2806368 ~ 2845762 (+)
CI01000086_02848037_02858638 NA coding downstream 82674 2847032 ~ 2858832 (+)
CI01000086_02866143_02871826 PABPC1B, PABPC1, PABPC1A coding downstream 101278 2865636 ~ 2871997 (+)
G298777 NA non-coding upstream 17103 2703650 ~ 2723553 (+)
G298792 NA non-coding upstream 37744 2702637 ~ 2702912 (+)
G298744 NA non-coding upstream 47149 2612993 ~ 2693507 (+)
G298743 NA non-coding upstream 129769 2610566 ~ 2610887 (+)
G298706 NA non-coding upstream 190688 2546716 ~ 2549968 (+)
G298850 NA non-coding downstream 137690 2902048 ~ 2902710 (+)
G298529 NA other upstream 859203 1876890 ~ 1881453 (+)
G298381 NA other upstream 1563740 1172156 ~ 1176916 (+)
CI01000086_01150842_01165271 DHDDS other upstream 1574734 1150842 ~ 1165922 (+)
G298366 NA other upstream 1592789 1136660 ~ 1147867 (+)
G298208 NA other upstream 1760546 947191 ~ 980110 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location