CI01000086_02886112_02888612 (KDF1A)


Basic Information

Item Value
gene id CI01000086_02886112_02888612
gene name KDF1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2885447 ~ 2890213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02886112_02888612.mRNA
AGATCAGCTTGCTGGTCACATAATTGAAATGCCTTTTGGAGCACAACGCTTGTAGACACAGTATGAAGGCGTCCACTGCGCGGTAGTTTGACGCAGTTGGGCGAAGTAGTATATTGGTGCAATGTTGGTGATTTCATTATTTGATTTCACCACTGCCATTGCACGCTTGTGTTGTATTTCTGTTATATCTCCAGGGTTGAGGAAGTCATTGTGCAATGAATCTAGAATGAAAATTTCAAAGCCTGTTTAACACTGATGTTTATGTATATTAACTAAATAACATTGGTTATTTTTCTTTGCAGTCAATGTGATTTATTTTTTGTTCTGCTTTAAACATTTCTTTGAAATACTGCATAACAAGGCCTGTTTCACATATCTTTCATCTACAGAGTAACTGCAACAGCATACTTAAGTATTTACTTTAATGACAGCCATAAATGACAAAAATGGTTAGGCTATTGAGAACTACAATCTTAATGGTTATGAAATTTACTTTACATGAGGAGAAAGACCACATTAATATCTAAGTTGTAATTAAATGGCCAAATCTGAAAGTGGTGTTGTAAACTACCTAAATTGCCTGGTTTTAATCAGATTTTCTGATTAATAAGTGCTGTTTGCTTTTCGGGTTTATCAAACCAGACAGGCGTCTTTTTAAATTGCAAAACACGTTGATAATTCTGTATTTTAATCATGCATGCAACGTTCAGCAACAACGGGCTCAGCTCATCTTTACATGCATGAGCCCATTCCACGATTGTGCTGCACTGTTTATGTGTGCAGTGTGAATTCTGCAACCTGATAATATTGGCTCTTTTAAGTGAGATGTTTGAAACATGCCTAAGTATCACTGTTTTGTGAACTTTCTCAGCTCTGATAAATTTTGATGCATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTCATTTCAAACCCGTAAGACTTTCGTTCATCTTCGGAACACAAATGAAGATCTTTTTGATGAAATCTGAGAGCTTTCTCGATCGAGACTCGATTGCTTATATTATGAACAGATTGAATTTAGGCTTTTATTCACATATAAACATTGATCAGTTAACAGAAGCTCAACTGAACCTGCTTGTCTAACGAGAACAAACCTTTTGAGGAAGCTCAAACGTGCTGCGTAACACACAAGAATGATCCTCATTGGTTCTCGCACGCATCAAGAAAACATGCTTGAGCTTCCGTTTACCACAACTGATGTGTGAGTTGATGAATTTTTATCTGTGAATAAAAGCCTAAATTTAGTCTGTTCATCATATAAAGCGATCGTGTCTCTTCAGAAAATTTGGACTAAACCACTCAATTCATATGGATTAGTTTTACGATCTCTTTATGAACTTTTTGAAGTGTCAAAGTGGTAGTTGCGTAGCTGTCTATGGAGGAGCAGAAAGCTCTCAGATTTCATCAAAAATATCTTGGTTTGTGTTCCGAAGATGAACGAAACTCCTACAGGTTTGGAACAACATGAGGGTAATTAATGACAGGATTTTAATTTTTGGGCGAACTAACCCTTTAATGTCCACATTCCTGCAGGTCCTGAATGTGGTGAGTTATGCCTGGCCACAGCACAGGAACACATCACAAGACGCGTCCTCATAGCTCAAGCCGTTCTAAGGCTGATGGCTACAGGCAAAGCCGCACATACTCCAAGGACAGCAGCACGAGCCAGGAGACCTACAAGGAGAACTACAGCGAGCAACCTCGTAGCATAGACTCGCAGTTCCCCCGTAAAACCCATCCTCACTACGCCAATGGACGAGGCTCGGAAACCCTGGGCTTTATACCAGGATCTGCAGACTCTCCTCAGGGTACTCAAGCCTGTGGCTCATGTGCTTCCCTCGGCTGGAGTGGTTGCAAAGCTCTGCTGTGCTGCATTCTCACCTGTGGGCTTTATGGGTCGCGGAAACCTTGCTTGCCACCCAATGAGAGCTCCACTGACAACTCTTTAAAACCTGAGCCAGAAACCAGGAAGCCAAATGGATTGGCACTGTCCAACCCTACATGTGGTGTAAGCCTTGAACCCAGCAAGCCGAGGCAGCTACCGAGCTCTGGCAGCTTCAGGTATGGCGACGTCTACTTTGCTGGCAAGAAGGTGGAGTACCCTGTCAACTCAGAGGCACCTCCACGACGGACCAGGACAGCAGGGAAGGGTGACAACCAGCGGCCTATCAGTAATACCAGTATCTACTCTAGGGAGGATTTGGATCTAGATGACCTGGATGATGGCGGCACAGATATCGACTCGCTAATCACTAAAAAGCTTCTAGAACTTTATAAAATGCACCAGATTGAGCAGCTGGCAAAATGCACGTCTGATGTGTCCTTCTCACGTAAAACCAATGAGATCAGCGATCTGATCAACAGCATTGCTCAGGACTACAACTTGGAGGAGCAGGAAGCAGAGTGTCGGCTGGTGCACGGCGTCATACGCATCAGCACCCGCAACAAGTCCTCAAAAGGTTACAAAAGCAAAGACTATAAATCGCATGATGCAATGCAGCATACTAACGGGAGGAGGGATGGAACGCTGCCCGACAGTGGGAATGAGACCATGACCTTTACCTTTAGTGATGGGGATCCCGAGGTGCTAGTGTCAGAATTGACACCGTCAGATGAGCTTGCCCGAAAGATGAGAGGCCACAGTGGGAAAAATTACTACTCAAGCTCGGCCACAGATTCATCAGGGGCTCCGCTATTGCGCTAACACTCCAGCTGTTCACTCTTAATTACTACTGCCTAACTAGTGTTCATTTACTGTCCTTGCTCCTCTCATATTTCAGTGAAAGCAGTTATTATGCTAAGGACAGTTTGTGTTTGTTTGAATGCCCAAAGACTGCTGTTGTCCACTCAGATTTAGGCACAGCTTCTGTCATGTTGCTACAAAGTGTAATGTTAAACAAAGGAGGCTCTTGCCAAAAAAAAAAAAAAATGTTGCACTTGATGGTTCCCTACTACCCTCGCCAGAAGCCATGCGGATAGTAACATAATGGACAAGTTCCCTCACCAAACCATCAGCATCAAAGGGTATTTAAGTATTGGATCTAACTGTACTTTTGGAGACAAGAGTCACTGCTGTCGTCCTAAGTGGTGATGTATCTATTAATATGCCTGTATTGAGCACTGATTAATAGCAACAATGAGACTTCAATCAGTTGCTGTTCATCGGACTGCTTTGCTCTGGTAGCCCGTCCTTCAAATGTCGCCTTAGATGAACAACTGTTCTTTGTTTAAACGATTGAATGCAATTTAATGTTGTTTTGGGACTGTTCACGGTCAGATGATACACCCACATCTGTATGGTGAAATGTCAGTTTTGAAATACCTTGTATAGATGTAGTTTTTTCATAACTTTTTTTGTATTGAAATAAA

Function

symbol description
kdf1a Predicted to be involved in regulation of epidermal cell division. Predicted to act upstream of or within keratinocyte development. Predicted to be active in cell junction. Human ortholog(s) of this gene implicated in ectodermal dysplasia 12. Orthologous to human KDF1 (keratinocyte differentiation factor 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02886112_02888612.mRNA True 3418 mRNA 0.42 3 2885447 2890213

Neighbor

gene id symbol gene type direction distance location
CI01000086_02610598_02642920 CDK14 coding downstream 242527 2610567 ~ 2642920 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding downstream 339639 2542368 ~ 2545808 (-)
CI01000086_02403053_02403317 ZNRF2 coding downstream 482130 2402872 ~ 2403317 (-)
CI01000086_02400288_02400580 NA coding downstream 484839 2399858 ~ 2400608 (-)
CI01000086_02366362_02373059 SLC6A20 coding downstream 512388 2364331 ~ 2373059 (-)
CI01000086_02893723_02895660 NA coding upstream 3208 2893421 ~ 2895833 (-)
CI01000086_02897831_02901375 TMEM222, TMEM222A, TMEM222B coding upstream 7591 2897804 ~ 2901375 (-)
CI01000086_02906694_02918246 WDTC1 coding upstream 16000 2906213 ~ 2918246 (-)
G299861 NA non-coding downstream 8403 2876747 ~ 2877044 (-)
G299825 NA non-coding downstream 159613 2725595 ~ 2725834 (-)
G299803 NA non-coding downstream 190468 2651013 ~ 2694979 (-)
G299805 NA non-coding downstream 231037 2653669 ~ 2654410 (-)
G299609 NA non-coding downstream 279051 2547583 ~ 2606396 (-)
G299598 NA other downstream 17344 2865682 ~ 2868103 (-)
CI01000086_01852638_01897719 UBR5 other downstream 982028 1852146 ~ 1897719 (-)
G299528 NA other downstream 1190270 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1624210 1257926 ~ 1260025 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location