CI01000086_02906694_02918246 (WDTC1)


Basic Information

Item Value
gene id CI01000086_02906694_02918246
gene name WDTC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2906213 ~ 2918246 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_02906694_02918246.mRNA
AAGCTCTGCCTCTCCGAGAGGCTTGAATTGCACAGATGATCAGAGATCTTTGGCACCTGGATGCAACAGTCTGAGTCGACGCTCCATGACGTGCTGTGAGACCATGTCGCTGCGGAACGTCACTAGTGATCTTCTGCACAGGCAGATCAGGGAGAAGAGAGCGCTGGACTTCCAGAGACACTATCATGTGACCGACCCGTTTATAAAGCGTCTGGGGCTGGAGGCTGAACTACAGGGTCACTCTGGCTGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGATCTCCTAGCCTCAGGTTCAGATGATCAGCATGCCATCATCTGGGATCCCTTCCGGCACAAAAAGCTCATCACTATGCACACAGGACATGCAGCTAACATCTTCTCAGTCAAGTTCCTCCCTCACTCCGAAGACCGAATCTTGATCACAGGAGCCGCCGATACCAAGGTGCACGTGCACGACTTGACGGCGAAGGAGACCATTCACATGTTCTCAGACCACACTAACCGCGTCAAACGGATTGCAACGGCTCCCATGTGGCCCAACACCTTCTGGAGCGCGGCTGAGGACGGCGTCATTAGGCAGTATGATCTGAGAGAGAGCAGTAAACGCTCGGAGGTTTTAATTGATCTGACGGAATATTGCGGGCAGCTTGTGGAAGCAAAATGTCTGGCGATCAACCCCCGTGACAACAACTACATGGCTGTGGGAGCTAACGGGCCTTTTGTTCGGCTCTATGACATTAGAATGATCCACAATCACAGGAAGTCTATGAGTCAAAGTACCTCGGCTGGTGTTCATACGTTTTGCGACAAACGGAAATCGATACCGGATGGTGCTGGACAGTACTATGTCGCAGGTCACTTACCTGTGAAGCTTCCTGACTATAATAACAGATTACGAGTTCTGGTGGCAACCTATGTTACATTCAGCCCCGACGGTACTGAACTGCTGGTAAACATGGGTGGAGAACAGGTGTATTTATTTGATCTGACGTTCAAACAGAGACCGTACACTTTTCTGCTGCCCAAAAAGTGCCATCCATCATCAGAGGTACAAAATGGGAAAACCACCAACGGTGTGTCCAATGGGATTCATCTACCTGCAAGCCGCCTTAAACTGGCTAAATTTACCAGTGGCTCCAATGATCTTCCTCCTCATCTGGAGAGGATCAAGCAACAGGCTAATGATGCGTTCGCGCGGCAGCAGTGGACTCAAGCCATTCAGCTCTACAGTCTGGGCCTCCATGAAGCCAGTCAAAATGCTATGCTGTATGGAAACCGTGCTGCTGCATACATGAAGCGAAAATGGGATGGTGATCACTATGACGCACTGCGAGACTGTCTTAAGGCCTTGTCCCTGAACCCAGGCCACCTGAAGGCGCACTTCCGTTTAGCGCGCTGCCTCTTTGAGCTCAAGTACATCGCTGAGGCTCTGGAGTGTCTAGATGACTTCAAGGGCAAGTTTCCAGAGCAGGCACACAGCAGCGCTTGTGACGCCCTCGACAAAGACATCAAGGCTGCCCTCTTCTCAAAAACAGACTCCTGTAGGTTCTTGTCTTGTCTGTCTTGGATCTTGGATTTTGTTTGTGCATGCATTTTAATAATCAGGACTCTGGATGTTTTTTATGCATCTAATCTAGCTGACGACAAAAAGGGGAACAGCTCCATCCGCTTGCATAATTTCAGCCGGAAAGAATCCATCCCGGAGGATGAGATCGTTCTCAGAGAGCGAAGCTTCGACTACAAGCATCGCTACTGTGGCCACTGCAATACGACCACTGACATTAAGGAAGCCAACTTCTTTGGAAGTAAAGGACAGTACATTGTGAGCGGTTCAGATGATGGGTCATTTTTCATCTGGGAGAAAGAGACAACGAACCTGGTGCGGATCTTACAGGGGGACGAGTCTATAGTGAACTGCCTACAGCCGCACCCCAGCTACTGCTTCCTGGCCACCAGTGGTATCGATCCCGTGGTGCGACTGTGGAACCCAAGACCGGAGTCGGAGAATGAGAACTGTCGGGTGGTGGAGGACATGGAGAGTGCGGCCCAAGCCAACCAACGGCGCATGAATGCGGATCCGCTGGAGGTGATGCTGTTGAACATGGGCTACCGCATCACAGGCCTGAGCAGCAGAGGAGCCGAGGGCTCGGATGAAGACGACAGCTCGGAGGGCCAGGTTCAGTGCCGCTCTAGCTAGAACGCCGTCACGGACCTCCACACGCACCCGTCCCACGTTTGAGAAGAGGGCAAAGCACCTTAGATATTTACTTTTGCAATTTCAGTTCTTCAACGTGATGCTGAGTGAATGAATGCTGCCGCTCCGCACTATGCAGAAGTTTGGAGAAGTGGGAAACACAATCGCACAATCCAAGTCAAGTCAAAAGCACTTAGAGATTAATGTCCGCAAAATCATTTTAAAAAGCGCGCGCTAAGAAGAGTGTTGGCGTACCGTCAGATTAAAGCTTGTTTCCAAAGTCGCAAAGCGCTTGGGTCTTTCTAATGCGGGGCTTGCTATTGGACGCTGTTGGCCATGATATTCTCATTTTCTTTCTTTTCCCAAATGAACTTAATCATCTTTATGAGCGCCAGAGGACAGTAAAAAATAAGTGTTATTGTTCAGAAAAGTATGTTTATAGGTCTGCAGCACTTTCTTTTGGAATATATTCTGGAAAAATAAA

Function

symbol description
wdtc1 Predicted to be involved in negative regulation of fatty acid biosynthetic process. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human WDTC1 (WD and tetratricopeptide repeats 1).

GO: NA

KEGG:

id description
K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_02906694_02918246.mRNA True 2684 mRNA 0.50 14 2906213 2918246

Neighbor

gene id symbol gene type direction distance location
CI01000086_02897831_02901375 TMEM222, TMEM222A, TMEM222B coding downstream 4838 2897804 ~ 2901375 (-)
CI01000086_02893723_02895660 NA coding downstream 10380 2893421 ~ 2895833 (-)
CI01000086_02886112_02888612 KDF1A coding downstream 16000 2885447 ~ 2890213 (-)
CI01000086_02610598_02642920 CDK14 coding downstream 263293 2610567 ~ 2642920 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding downstream 360405 2542368 ~ 2545808 (-)
G299861 NA non-coding downstream 29169 2876747 ~ 2877044 (-)
G299825 NA non-coding downstream 180379 2725595 ~ 2725834 (-)
G299803 NA non-coding downstream 211234 2651013 ~ 2694979 (-)
G299805 NA non-coding downstream 251803 2653669 ~ 2654410 (-)
G299609 NA non-coding downstream 299817 2547583 ~ 2606396 (-)
G299598 NA other downstream 38110 2865682 ~ 2868103 (-)
CI01000086_02366362_02373059 SLC6A20 other downstream 451648 2364331 ~ 2373059 (-)
CI01000086_01852638_01897719 UBR5 other downstream 1002794 1852146 ~ 1897719 (-)
G299528 NA other downstream 1211036 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1644976 1257926 ~ 1260025 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00010858 wdtc1,LOC106605082,LOC106583467 coding CM030133.1 CM030133.1 2712527 ~ 2723800 (-)