Gene
RNA
| Item | Value |
|---|---|
| gene id | G298888 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000086 |
| NCBI id | null |
| chromosome length | 2920448 |
| location | 407738 ~ 409249 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU339315 | True | 1512 | lncRNA | 0.40 | 1 | 407738 | 409249 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000086_00357753_00361658 | EFHB | coding | downstream | 46080 | 357691 ~ 361658 (-) |
| CI01000086_00304074_00337267 | NA | coding | downstream | 70085 | 303775 ~ 337653 (-) |
| CI01000086_00247732_00293880 | SATB1 | coding | downstream | 113858 | 247732 ~ 293880 (-) |
| CI01000086_00519578_00523117 | NA | coding | upstream | 110241 | 519490 ~ 524477 (-) |
| CI01000086_00544490_00561333 | NEK10 | coding | upstream | 134901 | 544150 ~ 564184 (-) |
| CI01000086_00573050_00574400 | LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 | coding | upstream | 163716 | 572965 ~ 574400 (-) |
| CI01000086_00582697_00586449 | VSIG10L | coding | upstream | 173448 | 582697 ~ 586449 (-) |
| CI01000086_00587995_00596565 | BRAFLDRAFT_115002, ETFB, ETFB.L | coding | upstream | 178516 | 587765 ~ 596739 (-) |
| G298990 | NA | non-coding | downstream | 81166 | 326346 ~ 326572 (-) |
| G298988 | NA | non-coding | downstream | 81942 | 325579 ~ 325796 (-) |
| G298887 | NA | non-coding | downstream | 150266 | 256348 ~ 257472 (-) |
| G298947 | NA | non-coding | downstream | 232366 | 175148 ~ 175372 (-) |
| G298944 | NA | non-coding | downstream | 234905 | 172560 ~ 172833 (-) |
| CI01000086_00394709_00423259 | NA | non-coding | upstream | 13398 | 393499 ~ 423259 (-) |
| G299049 | NA | non-coding | upstream | 220472 | 629721 ~ 632326 (-) |
| G299096 | NA | non-coding | upstream | 284847 | 694096 ~ 726393 (-) |
| G299218 | NA | non-coding | upstream | 434491 | 843740 ~ 844179 (-) |
| G299221 | NA | non-coding | upstream | 444355 | 853604 ~ 876168 (-) |
| G298872 | NA | other | upstream | 125774 | 535023 ~ 536310 (-) |
| G299173 | NA | other | upstream | 356368 | 765617 ~ 767879 (-) |
| G299107 | NA | other | upstream | 666897 | 1126738 ~ 1126798 (-) |
| CI01000086_01257926_01260025 | SERPINB1L4, SERPINB14 | other | upstream | 849765 | 1257926 ~ 1260025 (-) |
