G298872


Basic Information

Item Value
gene id G298872
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 535023 ~ 536310 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339299
CTTATGATGATTATCTGGATATGTTTGTGAATGCCGTACCTGCAGACACCAGCACCACGGCGGAGAAGAGGCTCATTTCTTCCTCGTTGAGCTGCAGGGCCGTGAGCTTCTCGCTGAACTCGAACATGCAGTTGAGCAGCTCTCCGGCGCCCATGGAGCGCAGCAAGTCCACGCTGTACTTCCTCCCGCTGAGGAAGGTCACCGTCCGCTCTTTCACATCAAAGGTTCCCGCCTTGAGGAGGTTAACCTGGTCGTGTTGGGAGAGGTCCTGGAAGCCAGGGATCCGCTTGGCAAATTCCACGACTTCTCGTACAGCAGGGATGAAACTCTTGGAGAACTCCTCCCAGATTTCATGACCGGGCTTGCAGGGGTCCACGAAAGGGGAAACGCTCATGGACTAACCAGATGTCCTCTGTTTCCTCCCGTCTGGAGTTTGTTCATGCTGTTCCTGTGGTAAGGCAAGTTTTCTGGCTGACGGGTGCACTGCTGGGTCACATGTTCCCTGTAAGGTCCTTTCAGGCCGCCCTCGCAGTCAGAGCGCCTCTGGTTGTCGTTCCAGCGGTTCCAGCATTCCCGCTGCGGCTCCTCGTCCTCCTTGCTGGTGCTGCTGAGCGTTTCGGAGCTGGCCGGAGATACGGACGAGCTGTACGTGAACAGGTCCTCGCGGGGAACGCGTCCGTTGCTCGCCGCGTCTTCCTCTCCGCTGTCCGACGAACAGGACGACGCCGTGTCCATGGGAACAACTGACTCCGAGTCCCGGGAGAGATCCGACGAGGACCGAGGCGAATCCGGCGGCGACGGAGAAGAGGAGCTGGAGTCGCTCTGGCTGGTCTCTATGGCGCACGGGACGGTCTGGGCGCCGTGAAGCACGTGCTGCAGCTGACTGTTGTTCATCATGTTATTCATGGCCGTCTGCATCTCCAAGAGCATCCGCTGCTTCTCCCGCTTGGGGATGCGTCCGAATCGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU339299 True 968 TUCP 0.59 3 535023 536310

Neighbor

gene id symbol gene type direction distance location
CI01000086_00519578_00523117 NA coding downstream 10546 519490 ~ 524477 (-)
CI01000086_00394709_00423259 NA coding downstream 111764 393499 ~ 423259 (-)
CI01000086_00357753_00361658 EFHB coding downstream 173365 357691 ~ 361658 (-)
CI01000086_00304074_00337267 NA coding downstream 197370 303775 ~ 337653 (-)
CI01000086_00247732_00293880 SATB1 coding downstream 241143 247732 ~ 293880 (-)
CI01000086_00544490_00561333 NEK10 coding upstream 7840 544150 ~ 564184 (-)
CI01000086_00573050_00574400 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding upstream 36655 572965 ~ 574400 (-)
CI01000086_00582697_00586449 VSIG10L coding upstream 46387 582697 ~ 586449 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L coding upstream 51455 587765 ~ 596739 (-)
CI01000086_00935341_00936321 NA coding upstream 398742 935052 ~ 939188 (-)
G298888 NA non-coding downstream 125774 407738 ~ 409249 (-)
G298990 NA non-coding downstream 208451 326346 ~ 326572 (-)
G298988 NA non-coding downstream 209227 325579 ~ 325796 (-)
G298887 NA non-coding downstream 277551 256348 ~ 257472 (-)
G299049 NA non-coding upstream 93411 629721 ~ 632326 (-)
G299096 NA non-coding upstream 157786 694096 ~ 726393 (-)
G299218 NA non-coding upstream 307430 843740 ~ 844179 (-)
G299221 NA non-coding upstream 317294 853604 ~ 876168 (-)
G299266 NA non-coding upstream 465955 1002265 ~ 1002619 (-)
G299173 NA other upstream 229307 765617 ~ 767879 (-)
G299107 NA other upstream 539836 1126738 ~ 1126798 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other upstream 722704 1257926 ~ 1260025 (-)
G299528 NA other upstream 1131896 1668206 ~ 1695177 (-)

Expression


Co-expression Network