G298198


Basic Information

Item Value
gene id G298198
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 573392 ~ 578643 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU338542
AGCAGAACGAAGAGTGTGGAAATGAAAAACATGATTCCTGCAGCGAAGGAACGATTGAATCTCTCAAAGGCGGAGAAGTGAGCGAAGGAGAGGATGCCTGCGATGATTCCCGCAAAACACGACATCGCTGAGAGGATCATGAAGGCCCGGGTTGCGTTCCAGTAAGCAATACTGTCGGTCTGCGTGTAGCATTTGCCAGACATGCAGTATCTCCACAGGCCCTGGTGAGCGAAGCTCCCGGACAGTCTGTACTGCATCCAGTAGTCCGTCGCCGTGGAGACCACCAACAGGATGTTGGCCACGATGGCACAGAACAAACCCCCTCCCATAAAGCTGTACATCCTGAGGAACACTGTGGCGGCTGAGAGATCTAAAAACACTGAGGTCTTCAGGATAAATGAACCTGCTTAACTATTGACCTTCCCAGCGGGAAAGAGAGAGAAAGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU338542 True 448 lncRNA 0.52 4 573392 578643

Neighbor

gene id symbol gene type direction distance location
CI01000086_00569583_00570500 NA coding upstream 2892 569531 ~ 570500 (+)
CI01000086_00528152_00537757 NR1D2 coding upstream 34640 528074 ~ 538752 (+)
CI01000086_00515623_00516606 NA coding upstream 56536 515623 ~ 516856 (+)
CI01000086_00499939_00501377 NA coding upstream 71293 498625 ~ 502116 (+)
CI01000086_00368462_00375640 RAB5AA, RAB5A.L, RAB5A, RAB5AB coding upstream 197316 366994 ~ 376076 (+)
CI01000086_00598327_00599803 NA coding downstream 19684 598327 ~ 599895 (+)
CI01000086_00603554_00613149 USF2 coding downstream 24911 603554 ~ 613470 (+)
CI01000086_00629905_00632087 NA coding downstream 51122 629765 ~ 632433 (+)
CI01000086_00702140_00704803 NA coding downstream 123433 702076 ~ 705733 (+)
CI01000086_00877464_00899432 IGLON5 coding downstream 298821 877464 ~ 899492 (+)
G298106 NA non-coding upstream 180135 392988 ~ 393257 (+)
G298105 NA non-coding upstream 181137 392012 ~ 392255 (+)
G298104 NA non-coding upstream 182536 390581 ~ 390856 (+)
G298096 NA non-coding upstream 207628 365531 ~ 365764 (+)
G298071 NA non-coding upstream 216346 356731 ~ 357046 (+)
G298220 NA non-coding downstream 73623 652266 ~ 721985 (+)
G298219 NA non-coding downstream 121932 700575 ~ 753258 (+)
G298230 NA non-coding downstream 128895 707538 ~ 710093 (+)
G298211 NA non-coding downstream 143603 722246 ~ 783275 (+)
G298208 NA other downstream 368548 947191 ~ 980110 (+)
G298366 NA other downstream 558017 1136660 ~ 1147867 (+)
CI01000086_01150842_01165271 DHDDS other downstream 584131 1150842 ~ 1165922 (+)
G298381 NA other downstream 593513 1172156 ~ 1176916 (+)
G298529 NA other downstream 1298247 1876890 ~ 1881453 (+)

Expression


Co-expression Network