G298220


Basic Information

Item Value
gene id G298220
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 652266 ~ 721985 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU338569
CTTATTCCTCGTCTGGGATCGTGTAGAGCTCTTTGAAGCTGCACTGAAACTGACATTTGGACCTTCAGCCTGTTGGTCCCTGATGAAGTCCATTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAATCTTTAATTTCTTTTCGACTGAAGAAAGAAAGACATAAACATCTTGGATGACATGGGGGTGAGTAAATTTATCAGTAAATTTTAATTCTGAAGTGAACTTTATGTTACAAATGTATTCTTGTAGTTATTCAAGCACACAACCTTCCAAAATCACCTGTTGAAAACAAACTTCAGCACAAAACCTGAGATCATGTGTTGGCAGGCAGCAGGGAGCAGGTGAACCGGTTGTTGAGTATATCATAACCAATTTTGTACGTTAATGCGGTACATGGTGGGGCAAGTGGGTCAATGTGAATGGTTTGTGTTGGTTTGTCTCCCCCTTTTGCAGGATGGAGATGGCTGGCTGGCAGAGAAAGCGCAATGAAATCAATCCTCTGCCAGCCGAAACAGATGCCTTGTCTTTCAAAACTGGCTCCTATCTTTTTCGATGTGGAGCTCTCCAGGCTTGGCCCTGCACATATTCTGTGGCTCTCTGTTTTTTCTGGATCTGTTTGTCTTTGTTGTTGCCGGCTTGAAGTCCATCAGACCTGGCCTGTGCGTCTAGTGGGAAGGAGCCGTTGACGTAATCGCATTGCTGGGGTGGGCTGATTCAATCGCACTGGGCTTCAAGCCTGAGGTTGCTTATTACACCTGTTGGAAACAGCACTGACAGATGGCAGTTTTTTTGGTGATCTGGACTTTTTAAAATGTGTCGCTAAGGCAATCAAGCCGTAGAGGATTTGTAAACATTTTCCCCACAGATACTAAACCATTTAGCATGTTATTTCAGTGCAAAAAAAAATGCATTTTATTCACAAACCGCCCGCAGTCCAGCTCAACCAGATGCTAAATGTGCTGGAATAGCACTGCGCCGAGTCATTATTCTTTTCAGCATGAAACACACCTTCTTTTTATGCAAATGAAGCAGTTTTATTCACAAAAATAGCGCTATTTATATGCTCACTTGGACTGCGGTAAAGTTTGAAATGTTGCATATCCATTTTTATTGTTTTCAAGTTTGTCTTCGGGTGTTTTTATTGCCATTTTCATCATCTTCTTTAAGTAGTTCTTAAAAGCAATGGTCCAACTGTGAGCGCCACCTAGTGGATCCATCAATTAATGCTGTCAATTCCAGGCCATTTTAGTCCGGACTGCTTCACAAACGAGGGTCAATTCAACGCTGGATTTGCACAAAAGATTGACATGACGGCACATGCTAGTCGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTTCAGTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTTGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACTGATCATCGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGGAAATGAAGCTGATAAAGCTCTGTCATCATAGGGGAAAATTTGATAAGCTATAATGTTGTGCTATTAAACACAAACTTATTTAAAAGATATTTGCATGCATTTTCTAGTGATCATGTAAACATTTTCCCTAAAGAAACACATTTGCAATCAATTGAGCATGTTAATTCAGTGCTAAGCTCTTCGTATTCACGAATAGTGGTGCGTCGTGAGTATTTTAATGAAGTCATTATTCATTTCAGCGTGAACATGCCTCATTTCTATGCAAATCCTGCTCATATAATGATTTTACTTTACTCAATTGACGTTAAACAATACTATAAACAGATTATACTATATAAACGCTATATTTGTAAACATTTTCTTTAAAGAAACACAATAGGGTGAATTAAATTCAGGCAAAACCTATGTCCACATTCCAGTAAAAGCAGCTTCTAAATGCACTAGAATAGCATCACACCTTGAGTATTTAAATTACACATGAGGTTGGTTATAAATTCACAAAACACTATGTAGAGCACTATTTGCCTAGTGCAATTGAATTTCATTAAAAAGAGATGTTTGTGTACGTTTTCTAGTGATCATGACAGCGGTAATTCATCAAATGATGGAGAAGAGTGGCGTATATTCAGATGCGTGTCGTAGACGAGGACACTTTTAGCATTTTAAAGAGATGCTTCTGGTGCTTTTTCCTATTCAGTATTTTTGACTTGTTTTCCAGTTCAAATATCTAAACATTCTTAAATCAAGATACATTTACTTGAGTATTTGACAAGACTTAATATCTTATCAAAATTAAGTGAGTTTATGCTTAAAACAAGAAAAATATCTGCCAGTGGGGTCAGAAAAACAAACTTAAAGGGAAAACAAGATTCTTAACCCATTGGCTATTTTTTTTTTTTTTTCAGAACGCAAGACTTAAAGGATTAGTTCACTTTACTCACCCCCATGTCATCCAAGATGTCCATGTCCTTCTCTCTTCAGTTGAAAAGAAATTAAGGTTTTTGATGAAAACATTCCAGGATTATTCTCCTTATAGTGGACTTCAATGGTCTTCAAATGGTTGAAGGTCAAAATTACAGTTTCAGCGCAGCTTCAAAGCGTTCTACGTGATCCCAGACGAGAAATAAGGGTCTTACCATCACTCATTTTCTAAAAAAAAAAAAATTTTTTATACATTTTAACCATAAATGCTCATCTTGAACTAGCTCTCTTCTTCATCTCTATTTGAATATTCCAGCGGTGTAGACGCTGCTAAATGTATTACTGCCCTCCACAGGTCAAAGTTTGAACTAATTGTTATATACTTGCACTAGCATATTGTATATGACAATTTAGTTCAAGATGAGCATTTATGGTTAAAATGTATACATTTTTTTTTTTTTTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338569 True 2922 lncRNA 0.37 3 652266 721985

Neighbor

gene id symbol gene type direction distance location
CI01000086_00629905_00632087 NA coding upstream 19856 629765 ~ 632433 (+)
CI01000086_00603554_00613149 USF2 coding upstream 38796 603554 ~ 613470 (+)
CI01000086_00598327_00599803 NA coding upstream 52371 598327 ~ 599895 (+)
CI01000086_00569583_00570500 NA coding upstream 81766 569531 ~ 570500 (+)
CI01000086_00528152_00537757 NR1D2 coding upstream 113514 528074 ~ 538752 (+)
CI01000086_00877464_00899432 IGLON5 coding downstream 155479 877464 ~ 899492 (+)
CI01000086_01030611_01038651 NA coding downstream 308286 1030271 ~ 1038748 (+)
CI01000086_01044588_01047516 NA coding downstream 322484 1044469 ~ 1047601 (+)
CI01000086_01053732_01056868 NA coding downstream 331372 1053357 ~ 1057119 (+)
CI01000086_01098078_01098642 NA coding downstream 375950 1097935 ~ 1098805 (+)
G298198 NA non-coding upstream 73623 573392 ~ 578643 (+)
G298106 NA non-coding upstream 259009 392988 ~ 393257 (+)
G298105 NA non-coding upstream 260011 392012 ~ 392255 (+)
G298104 NA non-coding upstream 261410 390581 ~ 390856 (+)
G298211 NA non-coding downstream 261 722246 ~ 783275 (+)
G298216 NA non-coding downstream 24836 746821 ~ 749474 (+)
G298223 NA non-coding downstream 32842 754827 ~ 777629 (+)
G298212 NA non-coding downstream 41243 763228 ~ 786262 (+)
G298233 NA non-coding downstream 70117 792102 ~ 797231 (+)
CI01000086_00499939_00501377 NA other upstream 150150 498625 ~ 502116 (+)
G298208 NA other downstream 225206 947191 ~ 980110 (+)
G298366 NA other downstream 414675 1136660 ~ 1147867 (+)
CI01000086_01150842_01165271 DHDDS other downstream 440789 1150842 ~ 1165922 (+)
G298381 NA other downstream 450171 1172156 ~ 1176916 (+)
G298529 NA other downstream 1154905 1876890 ~ 1881453 (+)

Expression


Co-expression Network