XLOC_010837 (mms22l)


Basic Information

Item Value
gene id XLOC_010837
gene name mms22l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32281200 ~ 32304780 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021204
ctCTCTTCCCAGTGGTCTGTTTGCACATTGTTGACATGGAGAGTGAGTTCTCACAGTCCCTCACTCCACCTGTGTCTCCATCTGCTCTGAATCATTATGGTGAATCTGCTCCCAGTCGGCCTCCTTGCTTCACCTGTGCTTATGAAGCAGGCAGAGAAGACACAGGACGGCTATCATCAAATGGCTACATCAGCAGAGGAGCCCTGAAGAGGTTGCTGTTAAAGCTCGATCCAGCTCCTGCAGATTTTGAGGGGGACACAgttgatatttttgacttcccATGGGTGACGGAGACGGCGCTGGTGGAATCTACCAAACTTCTGTTTGGCTTGTTCAGACAAAAGGTGTTAAAACTGGAAACGCTGGTGCAGTCCAGCTCACATGATTTTGGTCAAGCAAGCAGTCTTCATTATGAGGCAGAGGAACTGAGGCAGCAGTGTGTGCTTTTCCTCAGCTATATCAAGGTGTTCATTTACAGGTTTTTGGAGCCCTCACAATCCCTAGATGAAGGTCCTGTTCACCCCTTTAAAGACGCAGAGGCTCAGCTGCCCTCAGTCTTAGTGGAGGAGCTTTTCAGCATCACACTTCTTATTGGACGAATCGGAAATCTGCCAGCTAATGTCCAGAGTGCTTTCACTATTCAACACCAGGGAAAGCTCTTTCCTCCATCCTGGCAACTATTGCATCTGCACCTGGACATCCACTGGTCTGTTCTAGAGATCCTGCACCTGTTGGAGCAAAGAATGATGGGTCAGGTAGTTTACGCACACCAGTTTGTGAACTTAACAGGAGAGACGCTCACCAACATCAGTCTTTTTGAAGACCAGGTCAACAACCTGTTTTGTGATCTCATTGGCCTGGCCATGAACAAATATAATAAGGTGAGACCAACAGAGACTCTGAACACTCATCACTATCACTGCCTCTGCACAAAGGAATTATGGATTCTGCTCATACATTTACTGGAGCACAGGAGCAAAAGCATACACACACAGTCTTTTTGGAGCTATATAAATGCCTTGCTGCAGACTGTTCTGAAGGGGACGACTTCAGGAGATCGTGACCCAGGATTCCCTGTGCACTGTAAAGACCCCGAGGGCTTCACCTGGTGGCTGctcacacacctggcccagaTTGGGATGCACAACAGGAACGGCACTGCTCAACAGGAGAAACAACTGGAGGATAACTGGAGCTTTGTGATCGGGCTGCTGAAGTCTATCTGTGATCCAAAGAAAGCCGCACAAGAAGAGCAGATACGAGTGGTTGTCCATTGCTGCCTCAGTCTCAGCTTGATGTGGGGTCCAAACGTCAGCGCTGTCACAACATTCTGGGAATATTACAGCAAAAATCTAAACAGCTCTTTCACCGTGCCCTGGTTAGGTGTGTCGGGACTGGGCAGTATTTGCAAGACTCCCCTCTGTCTGTTGCAGCAGGCTAAAAGCTGCTGTAGCCCAGCACCGGTTGGCTCCAGCTCGCACACTCAGCTCTACCGCACAGCCAACTCCTTCCATATCTTTCTACGGATTCTGGCCCTTCACCTGAGCCAGGAACATGCTGGCGGCGCCCCCTGGAGACAGATCAAGGGCAGACTCTACTCAAAGTTCCACCAGAGGCGGATGACGGAGCTCTCTGACACGGGCCTGCTGCACTTCCTGCTGCTTTTCCTGGTCCTGGCGCAGTGTGCAGAGCTGGAGGACGTGGCCAGCCGAGCTTGCGACTTACTGGCCATGCTGCCCACCAACTCCACGCCCCTGGCCCTGCGTGCGCTGCAGTGGAGGGGCCAGCTGGCTCTTGTGCTGCTGTATTTGGAGAAGGGACTGGATGTTGGCGCGTTGGCGGAGCAGTTGGCCGTCTACTTCAGCCAAGCGGCCCGCGAGTTCTACCTGAAGACCACCGAGCCTTCACGCAAGCTAGCTCTCTGGGCACCACTTAGCTCATACCTGGAAGGGGTGAGCGAGGTGTTCGAGACGAGTCCTAATCTTACCCTGTCAGAGGAGAGGCTTCTGAACGAGGGCTTTGGACTCCTGCTGCCCGCCTGCCGCCAGTCCGAGCTCAGCTCCGCTTTGGGCTTCCTGCAGACGGTGCTGGCACAATTACGGAGAGTTCACCAGCGCTGTGGCCAGCCGTCTCACTCTGTAGACTCTCCCAGCTGGGCTCCTCTCCCCAGCGTGGCTAAAGAGCGCCACCAAGCGGTAGCAGCGGCACTCTGGTCCCACTTCTTCCCCTTCCTGTGCAGCATGAGGCTTTCCCAGACCCCCCCGCCACAGCTCGCGGACGCCGCAGCAGGCTTCACGCTGTTGGCATTAGACATGCCTGGCTCTGCCCCTCAAAACCTACAGCCCCACCCCATCCAGTCCATTATGCAGAGCTTTGGCTGGGATGAGATGCTCCACCCCCTGCTGGTAACCCACTATCTCAATCACCTGCTGCAAAATGGAGAACTGGTCAGTTGGGTTAGTTCTGGACAAGGCTCAGGTTCAGCCCAAGctttgtgtgtgcgtgcctgGATCCGCTGTGTCCTACAACAGTACCTCCATAAAAGCCCAGATGCTCCAGATACAAGAGCAGGCAGAAATCTGGATGAACAGTTGGCCGAGTTAACCAGACAGGTCTTCCGGCTTCCAGAAGTGGAGTTTGTGCTGCAGAGAGCTGGCCTGCAGTCTGCTGCTGTCAAGGACCCCAAAGCTGCGATGGCAGTGTTCCTCAAGGCTGTGGGCCGATCCTACTGTGAGCTCCAGCTTCTTTCTGAGCGTTCTTCAGCAGTGTCTCGAGCATTGGAGTATGTAGGAGATATCCTTAAATACATCAAGCCTTACCTGCAGAACAAGAGCCGGGAGGGCCTACACCTAGCGTACTGGACCATAGGCTGTTTGGTCAAGCACTGGAGCCACCTATTGGCCACCTCTAAAGCCCAGCAGCTGCTCTTCCGCATTGTAGATGTGCTTTTACTGCCCCACGCTCTCCTCCAACAGGACACTGCTGCACACACTCAAATGCTGTCAGCCCTCAAAGACAGTCTGCCTATGTTCCTGCAGGGTTTGTCCGTGGCAGTGAGCGTGTCCCATTCTCAGGGGGCGTACctgaagcagcagcagcacagTGTCATTTCACAGTACCTTAGCCGCTTCCTCCCAGCCACACCCTCTACTGGAGCAGTGGTCAATCATCCTGTCCTGCTGGCGGCCTGTGAATCTACACCCAGTCCACAGGGTGAAAGACTCAGGAAGAGCATTCTGCATGTGCTGAGAGAGAACTTCCTCCAGTTTAAAGGTCTCGCTCCTCCTCCTCGACTTGCAGCTGTTCTCTGTTTTCTGTTGGAGCTCCTGAAAAGGAACAGTGACAGAGATCCTGCCCTGCTCACGATACCCCTTCCTTCAGTGCTGCGCTGTTTAATGCTGGTGAATGAACCACAAGTAAAAAGGCTGAGCTCAGAGGTTACACAGCTCATTGTGGAGAGGTGCACGGCTGCGGTCGGAGAACAGCCATGTGAACACACTACTGCAATCCTACGGGCCTTTGTGGATGAGAATGAAGGCGTATACGATCAGCAAGTGTATAATGTTCTAGAAGTTGTAGCCGTCCTTCACCCCTTCACAGTGGCGGCTCTTATTCCCTTTCTGACACTGAGCCTGAGAAAGACAGAGTGCAAGAGAGGTCTGGGAAAGAATACCTCACTCAGGAATGGCTATAGGAGGTTGCTGGCCTTGCTTGGAGACAGTGGGCAGGCTGAGATGATTAGTTTAGAAGAAGACTGACTTCAGTGCCTGCATCAACTCTCAATCCACTGATGTATACCATGTACACGATGTAGACTTGATTGTGTTGCGGAATTGTGAATAAACTTTGTTTGAATACCCTTGTGTTCTGTGCCTCGCTATCAGACATCTGTCTTGGTAACACATGGCTTTAGTTAGGATGCTGGTCAGTCGCTGCTAGGGCTGGGTAATGAAATGCATCAAATCATGTGTTCACGTATGTTGTTCTGACAGAGAGACAAAATCTCTttcttaaaatacaaaaatgcagGGTTTGAGACTATTCATTGCTTAAGGAAATGAGCAATATTTGTAGGGACTTTAATAAAG
>TCONS_00021205
GGGTGAGCGTGACTGTAGCGCGGGAGTGCTTTGACACTGGGAAGAAGGACGCAGAAATTGTCAACAGTGGCTGAActCTCTTCCCAGTGGTCTGTTTGCACATTGTTGACATGGAGAGTGAGTTCTCACAGTCCCTCACTCCACCTGTGTCTCCATCTGCTCTGAATCATTATGGTGAATCTGCTCCCAGTCGGCCTCCTTGCTTCACCTGTGCTTATGAAGCAGGCAGAGAAGACACAGGACGGCTATCATCAAATGGCTACATCAGCAGAGGAGCCCTGAAGAGGTTGCTGTTAAAGCTCGATCCAGCTCCTGCAGATTTTGAGGGGGACACAgttgatatttttgacttcccATGGGTGACGGAGACGGCGCTGGTGGAATCTACCAAACTTCTGTTTGGCTTGTTCAGACAAAAGGTGTTAAAACTGGAAACGCTGGTGCAGTCCAGCTCACATGATTTTGGTCAAGCAAGCAGTCTTCATTATGAGGCAGAGGAACTGAGGCAGCAGTGTGTGCTTTTCCTCAGCTATATCAAGGTGTTCATTTACAGGTTTTTGGAGCCCTCACAATCCCTAGATGAAGGTCCTGTTCACCCCTTTAAAGACGCAGAGGCTCAGCTGCCCTCAGTCTTAGTGGAGGAGCTTTTCAGCATCACACTTCTTATTGGACGAATCGGAAATCTGCCAGCTAATGTCCAGAGTGCTTTCACTATTCAACACCAGGGAAAGCTCTTTCCTCCATCCTGGCAACTATTGCATCTGCACCTGGACATCCACTGGTCTGTTCTAGAGATCCTGCACCTGTTGGAGCAAAGAATGATGGGTCAGGTAGTTTACGCACACCAGTTTGTGAACTTAACAGGAGAGACGCTCACCAACATCAGTCTTTTTGAAGACCAGGTCAACAACCTGTTTTGTGATCTCATTGGCCTGGCCATGAACAAATATAATAAGGTGAGACCAACAGAGACTCTGAACACTCATCACTATCACTGCCTCTGCACAAAGGAATTATGGATTCTGCTCATACATTTACTGGAGCACAGGAGCAAAAGCATACACACACAGTCTTTTTGGAGCTATATAAATGCCTTGCTGCAGACTGTTCTGAAGGGGACGACTTCAGGAGATCGTGACCCAGGATTCCCTGTGCACTGTAAAGACCCCGAGGGCTTCACCTGGTGGCTGctcacacacctggcccagaTTGGGATGCACAACAGGAACGGCACTGCTCAACAGGAGAAACAACTGGAGGATAACTGGAGCTTTGTGATCGGGCTGCTGAAGTCTATCTGTGATCCAAAGAAAGCCGCACAAGAAGAGCAGATACGAGTGGTTGTCCATTGCTGCCTCAGTCTCAGCTTGATGTGGGGTCCAAACGTCAGCGCTGTCACAACATTCTGGGAATATTACAGCAAAAATCTAAACAGCTCTTTCACCGTGCCCTGGTTAGGTGTGTCGGGACTGGGCAGTATTTGCAAGACTCCCCTCTGTCTGTTGCAGCAGGCTAAAAGCTGCTGTAGCCCAGCACCGGTTGGCTCCAGCTCGCACACTCAGCTCTACCGCACAGCCAACTCCTTCCATATCTTTCTACGGATTCTGGCCCTTCACCTGAGCCAGGAACATGCTGGCGGCGCCCCCTGGAGACAGATCAAGGGCAGACTCTACTCAAAGTTCCACCAGAGGCGGATGACGGAGCTCTCTGACACGGGCCTGCTGCACTTCCTGCTGCTTTTCCTGGTCCTGGCGCAGTGTGCAGAGCTGGAGGACGTGGCCAGCCGAGCTTGCGACTTACTGGCCATGCTGCCCACCAACTCCACGCCCCTGGCCCTGCGTGCGCTGCAGTGGAGGGGCCAGCTGGCTCTTGTGCTGCTGTATTTGGAGAAGGGACTGGATGTTGGCGCGTTGGCGGAGCAGTTGGCCGTCTACTTCAGCCAAGCGGCCCGCGAGTTCTACCTGAAGACCACCGAGCCTTCACGCAAGCTAGCTCTCTGGGCACCACTTAGCTCATACCTGGAAGGGGTGAGCGAGGTGTTCGAGACGAGTCCTAATCTTACCCTGTCAGAGGAGAGGCTTCTGAACGAGGGCTTTGGACTCCTGCTGCCCGCCTGCCGCCAGTCCGAGCTCAGCTCCGCTTTGGGCTTCCTGCAGACGGTGCTGGCACAATTACGGAGAGTTCACCAGCGCTGTGGCCAGCCGTCTCACTCTGTAGACTCTCCCAGCTGGGCTCCTCTCCCCAGCGTGGCTAAAGAGCGCCACCAAGCGGTAGCAGCGGCACTCTGGTCCCACTTCTTCCCCTTCCTGTGCAGCATGAGGCTTTCCCAGACCCCCCCGCCACAGCTCGCGGACGCCGCAGCAGGCTTCACGCTGTTGGCATTAGACATGCCTGGCTCTGCCCCTCAAAACCTACAGCCCCACCCCATCCAGTCCATTATGCAGAGCTTTGGCTGGGATGAGATGCTCCACCCCCTGCTGGTAACCCACTATCTCAATCACCTGCTGCAAAATGGAGAACTGGTCAGTTGGGTTAGTTCTGGACAAGGCTCAGGTTCAGCCCAAGctttgtgtgtgcgtgcctgGATCCGCTGTGTCCTACAACAGTACCTCCATAAAAGCCCAGATGCTCCAGATACAAGAGCAGGCAGAAATCTGGATGAACAGTTGGCCGAGTTAACCAGACAGGTCTTCCGGCTTCCAGAAGTGGAGTTTGTGCTGCAGAGAGCTGGCCTGCAGTCTGCTGCTGTCAAGGACCCCAAAGCTGCGATGGCAGTGTTCCTCAAGGCTGTGGGCCGATCCTACTGTGAGCTCCAGCTTCTTTCTGAGCGTTCTTCAGCAGTGTCTCGAGCATTGGAGTATGTAGGAGATATCCTTAAATACATCAAGCCTTACCTGCAGAACAAGAGCCGGGAGGGCCTACACCTAGCGTACTGGACCATAGGCTGTTTGGTCAAGCACTGGAGCCACCTATTGGCCACCTCTAAAGCCCAGCAGCTGCTCTTCCGCATTGTAGATGTGCTTTTACTGCCCCACGCTCTCCTCCAACAGGACACTGCTGCACACACTCAAATGCTGTCAGCCCTCAAAGACAGTCTGCCTATGTTCCTGCAGGGTTTGTCCGTGGCAGTGAGCGTGTCCCATTCTCAGGGGGCGTACctgaagcagcagcagcacagTGTCATTTCACAGTACCTTAGCCGCTTCCTCCCAGCCACACCCTCTACTGGAGCAGTGGTCAATCATCCTGTCCTGCTGGCGGCCTGTGAATCTACACCCAGTCCACAGGGTGAAAGACTCAGGAAGAGCATTCTGCATGTGCTGAGAGAGAACTTCCTCCAGTTTAAAGGTCTCGCTCCTCCTCCTCGACTTGCAGCTGTTCTCTGTTTTCTGTTGGAGCTCCTGAAAAGGAACAGTGACAGAGATCCTGCCCTGCTCACGATACCCCTTCCTTCAGTGCTGCGCTGTTTAATGCTGGTGAATGAACCACAAGTAAAAAGGCTGAGCTCAGAGGTTACACAGCTCATTGTGGAGAGGTGCACGGCTGCGGTCGGAGAACAGCCATGTGAACACACTACTGCAATCCTACGGGCCTTTGTGGATGAGAATGAAGGCGTATACGATCAGCAAGTGTATAATGTTCTAGAAGTTGTAGCCGTCCTTCACCCCTTCACAGTGGCGGCTCTTATTCCCTTTCTGACACTGAGCCTGAGAAAGACAGAGTGCAAGAGAGGTCTGGGAAAGAATACCTCACTCAGGAATGGCTATAGGAGGTTGCTGGCCTTGCTTGGAGACAGTGGGCAGGCTGAGATGATTAGTTTAGAAGAAGACTGACTTCAGTGCCTGCATCAACTCTCAATCCACTGATGTATACCATGTACACGATGTAGACTTGATTGTGTTGCGGAATTGTGAATAAACTTTGTTTGAAT
>TCONS_00021206
CCCAGCGTGGCTAAAGAGCGCCACCAAGCGGTAGCAGCGGCACTCTGGTCCCACTTCTTCCCCTTCCTGTGCAGCATGAGGCTTTCCCAGACCCCCCCGCCACAGCTCGCGGACGCCGCAGCAGGCTTCACGCTGTTGGCATTAGACATGCCTGGCTCTGCCCCTCAAAACCTACAGCCCCACCCCATCCAGTCCATTATGCAGAGCTTTGGCTGGGATGAGATGCTCCACCCCCTGCTGGTAACCCACTATCTCAATCACCTGCTGCAAAATGGGTCAGTGTCTTTTCTCCACTTGCTCTTTCATGCATTGCGTAGTTGGATTGACTCATCTTGTGTCTCACAGAGAACTGGTCAGTTGGGTTAGTTCTGGACAAGGCTCAGGTTCAGCCCAAGctttgtgtgtgcgtgcctgGATCCGCTGTGTCCTACAACAGTACCTCCATAAAAGCCCAGATGCTCCAGATACAAGAGCAGGCAGAAATCTGGATGAACAGTTGGCCGAGTTAACCAGACAGGTCTTCCGGCTTCCAGAAGTGGAGTTTGTGCTGCA
>TCONS_00021207
AGCGCGGGAGTGCTTTGACACTGGGAAGAAGGACGCAGAAATTGTCAACAGTGGCTGAAGTAAGTGTTACTGAAGTTGTTACAGCCTGAATGACAAAAACGCCTGTATTCGACGAAGAGGAAAGGTTTCGCCTTCTGATGATACAACTTACACGCCGATGACTGACAATTTAGTGCTTTAAATACAAAGCGTTCAACTGCTAACAACACCAGTTAAAACcaataaagctCTCTTCCCAGTGGTCTGTTTGCACATTGTTGACATGGAGAGTGAGTTCTCACAGTCCCTCACTCCACCTGTGTCTCCATCTGCTCTGAATCATTATGGTGAATCTGCTCCCAGTCGGCCTCCTTGCTTCACCTGTGCTTATGAAGCAGGCAGAGAAGACACAGGACGGCTATCATCAAATGGCTACATCAG

Function

symbol description
mms22l Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

GO:

id name namespace
GO:0031297 replication fork processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0043596 nuclear replication fork cellular_component
GO:0042555 MCM complex cellular_component
GO:0035101 FACT complex cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3869 Predicted to be involved in double-strand break repair via homologous recombination and replication fork processing. Predicted to act upstream of or within DNA repair. Predicted to be located in nucleus. Predicted to be active in nuclear replication fork. Orthologous to human MMS22L (MMS22 like, DNA repair protein).

Ensembl:

ensembl_id ENSDARG00000074691

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021204 False 4088 mRNA 0.52 24 32281200 32303835
TCONS_00021205 False 3931 mRNA 0.53 25 32281432 32304780
TCONS_00021206 False 552 lncRNA 0.55 3 32287796 32289736
TCONS_00021207 True 420 mRNA 0.46 2 32303643 32304764

Neighbor

gene id symbol gene type direction distance location
XLOC_010836 calhm6 coding downstream 47737 32226664 ~ 32233463 (-)
XLOC_010835 calhm5.1 coding downstream 59888 32216552 ~ 32221312 (-)
XLOC_010834 calhm5.2 coding downstream 72472 32205660 ~ 32208728 (-)
XLOC_010833 rwdd1 coding downstream 76730 32197554 ~ 32204470 (-)
XLOC_010832 kpna5 coding downstream 96740 32167430 ~ 32184460 (-)
XLOC_010838 NA coding upstream 43993 32348773 ~ 32378676 (-)
XLOC_010839 NA coding upstream 82796 32387576 ~ 32389474 (-)
XLOC_010840 NA coding upstream 253275 32558055 ~ 32559783 (-)
XLOC_010841 fbxl4 coding upstream 261438 32566218 ~ 32582798 (-)
XLOC_010842 CR848729.1 coding upstream 269330 32574110 ~ 32574236 (-)
XLOC_010626 CR392024.2 misc downstream 11386025 20895112 ~ 20895175 (-)
XLOC_010831 CR854927.2 non-coding downstream 117405 32152199 ~ 32163795 (-)
XLOC_010829 NA non-coding downstream 231207 32043389 ~ 32049993 (-)
XLOC_010828 CR854927.1 non-coding downstream 242137 32028079 ~ 32039063 (-)
XLOC_010821 NA non-coding downstream 389168 31882148 ~ 31892032 (-)
XLOC_010820 NA non-coding downstream 399577 31878685 ~ 31881623 (-)
XLOC_010843 NA non-coding upstream 282658 32587438 ~ 32627440 (-)

Expression


Co-expression Network