G298219


Basic Information

Item Value
gene id G298219
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 700575 ~ 753258 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU338568
ACACACACACACACACATATATATATATATATATATATATATATATAGATGTCTACCATCTGAGACGGAGACTACAGCAAAGATCTCTATTTGCTCTCCATTTGATCTCATCACTCTCTAGGAGAAGAAATTGAGCTATGAAAAAGATCTCATTTCTGTCCAATAGTCATGACCTCTCCCACTTAACTTTAAACTTAAATCTTGTTTATCCTTAAAGGTGAAGTGTATAATTTGGGTATCATCAAACAGAACACCCATGCGGTCAGGCATTGGTTAGCAAAACAGGTAAATCTACCATAAAACCCACTCCATCGGTCATGTCACTGTTGTTATGCTCTTCAAACAAACAGATTGCAGTTCTGTTTGCTGCCTGTAGTGGCGCAGCAATTTCACACTTCACCTTTAAGCCTGTTTGTGATGTAAGTGTGGGGTCATGGCCCTAATTCAGGACTTTAACTTCTTTCCTTTTCAAGATTTGTTGTGTGTGTGTGTGTGTGTGCCTTACATCCAGCACAGGTGCTCAATGCTAGAGTTCAATTTCTAGGTTGTAAGGTGTAATCACTCCTTGCTCAAGGGTTGCAGGTGCAACGGGCATGATTTGGGAGCGGGGATGGAAGGAGCCGCGGGAGGAAGCGTACGAGAGCCCTGAGGACCAACAGCCCAATCCACTGAGATTTATTGAGTCCACCCTCTAAAATCACAAGCCAAGAGCGTCGTGTCATCCTGATAAATGTGGAGGGGTGTTTGGGTTATTTCTGGGCCCTTTAAGGCGCCGCCGGGGAGCAAACACTCTGGCAACCTTCCTAATTCAAGGACTGTGGTTTTAAAAAGTGACCTACTTCATTCTTCAAAGACCACCGTCTCTCTCGCTGTCTTCACGCGGCGGTTCAGAGATCTAAACGAGACCGGGAAAAAAAGAGAGAGAAGTGCAGATCACAAACCAGTCAGTGTTTACAGAGAGTAGTCGTGTTTCATGAAAGGCTGTGAGTTAAATTCACTGAACACTTGAGCAGTATTTAGTGCAAAAACATGCATCCTACTAACAGCTCACAGTCAAACTTGACTGAGAAATATACACACCATTTCGCTAGATAAATCATATTTTTATTTTTTACATTTTTTTTATTATTTATTTTATTTTTAATTATTATTTTATTTGATTTATTTTTTAATTATTTTTTACATTTTTATTTTATTTTTATTTTTTTGAAAATATTACTTCATTTGATTTCTTTTTATTATTATTATTATTTTTTTTCACATTTTTATTTTATTTTATTCAGTTTTTTTTAGAGACGTGCGGCTCACAAATCTTTCTGTGTTTACAGAGAGTAGTCTGAGTTAATTCACTGAACACTTGAGCAGTATTTAGTGCAAAAACATGCATCCTACTAACCGCCCACACTCAAACTAGACTGAGCAATATACAGTGCACAGCATAAATGAGTACACCCCCTCTGAACAAATACAAAAAATGTATTTTCCTTATGATCACTAATACAATTCATGGAAAGATGGCAAAACTAAAATGTATTAAACATGTACATAATAAAAACGTCATTAATAGCCATAAAATAAGTAAATTAGCCAATTTGGTTTAAATTAAGGATTGCAGAAATGAGTACACCCTAGATTTAATTCAACAAATGTATAATATTCTAGCACTTAGTATGCCCTCCATAATTTTGAATATACTGCTCTGACCCTTCTTGGCACGGAGTGTACAAGTTCATGACAAATTGTCACATCTGTCCTGTTTAACTCCTGGATGATGAGCTCCTGAAATGCCCTGATCTTTAATGGGGAGTGTTGCTCAACTCGTCTCTACAGAATCCCCCACAGGTGCTCAAGAGTGTTAAGATTGAGAGCAATACATGTCCACAGAAGGTTTTTCACCTTGGGAGAATGCATATCCTCATTGTCATGTTGAAAAAATGCCCAACAATGCAGGGAATGAGGAAAGGGTAACATCTTCTGTTTCAAGTTTGTGTATTAAATTACACAGTGGTGTGGGAATTCATGACAGCATTGATAAAGCACAACTCCCTCACACCTTCAGCACTCATACATCCCTATATAAGAGCTTTACTACCGCTGAACTTTACTGTGGGAACCAGGNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU338568 True 2121 lncRNA 0.38 2 700575 753258

Neighbor

gene id symbol gene type direction distance location
CI01000086_00629905_00632087 NA coding upstream 68165 629765 ~ 632433 (+)
CI01000086_00603554_00613149 USF2 coding upstream 87105 603554 ~ 613470 (+)
CI01000086_00598327_00599803 NA coding upstream 100680 598327 ~ 599895 (+)
CI01000086_00569583_00570500 NA coding upstream 130075 569531 ~ 570500 (+)
CI01000086_00528152_00537757 NR1D2 coding upstream 161823 528074 ~ 538752 (+)
CI01000086_00877464_00899432 IGLON5 coding downstream 124206 877464 ~ 899492 (+)
CI01000086_01030611_01038651 NA coding downstream 277013 1030271 ~ 1038748 (+)
CI01000086_01044588_01047516 NA coding downstream 291211 1044469 ~ 1047601 (+)
CI01000086_01053732_01056868 NA coding downstream 300099 1053357 ~ 1057119 (+)
CI01000086_01098078_01098642 NA coding downstream 344677 1097935 ~ 1098805 (+)
G298198 NA non-coding upstream 121932 573392 ~ 578643 (+)
G298106 NA non-coding upstream 307318 392988 ~ 393257 (+)
G298105 NA non-coding upstream 308320 392012 ~ 392255 (+)
G298104 NA non-coding upstream 309719 390581 ~ 390856 (+)
G298223 NA non-coding downstream 1569 754827 ~ 777629 (+)
G298212 NA non-coding downstream 9970 763228 ~ 786262 (+)
G298233 NA non-coding downstream 38844 792102 ~ 797231 (+)
G298215 NA non-coding downstream 52891 806149 ~ 817933 (+)
G298266 NA non-coding downstream 65410 818668 ~ 821047 (+)
CI01000086_00499939_00501377 NA other upstream 198459 498625 ~ 502116 (+)
G298208 NA other downstream 193933 947191 ~ 980110 (+)
G298366 NA other downstream 383402 1136660 ~ 1147867 (+)
CI01000086_01150842_01165271 DHDDS other downstream 409516 1150842 ~ 1165922 (+)
G298381 NA other downstream 418898 1172156 ~ 1176916 (+)
G298529 NA other downstream 1123632 1876890 ~ 1881453 (+)

Expression


Co-expression Network