G299119


Basic Information

Item Value
gene id G299119
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1036036 ~ 1044620 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339574
GGTCCGAGTGAACGGCTGTAGTCGTGGGTCCATGTCGCCTGCATGGAGGAGAGAATCAGCTGCTCGTGCAGAACATTAAGCCCGAAAGTCAGACGCATTACAGGCGGAGTCTGGAACTTTATGAGTGTTTTTACTGGACTCACCTCTTATAACTTCCTGAAAGAGACGCTTGTTTCCAGAAACTTCTGTCCCATAAAATTACTAGAGCAGAGCTGGGAACATGTTGTTAGTGAGAGAACGGCACTGATGTGATTCTGTGAACTCGTATGCTCGGTCTGTGGAGTTCACCAAGTCAGAGGTCTTTAGGCGTCACCGTGTTTGCAAAGTGAGCCGTTTCCTTCTTCCTTTTCCTGTGGAGTAAAGCCCCTATTCTCTGTTTCAACAAGCAGATCTTCCTTATGGTCTAACCCTCCCATCTCTTTTGTTCTCAAACTTGAACATCAGTATTTGTAAATGCTTCAACAGCAGAATAATAAGAACAACTGAGGTAGACTTCAGCAAATGAACAGTACTGATATTCATTCTGTAAACAAAACAACTTTATGTCTAGCTCCTTAAAGATTTAGCCAAACGAACAGTACGAGTCATTCTGTACAATGAACACAAGCATTCTTCTGTTAAAATGAATCAAATCTACAGTTTATGACTGAACAACACAACTGCAGAAGAACAAGTAAATATTTTTACCAGATCAAGAAAACATTTTTCCTTGAGAATATTTAAGCCTAGAAGCTGAAAACTGTTTGAGAGTTGCATATATTCAGAGTCACAACATAAATGTACAGTTTTTCAAGTACAGTAACAGTGAGTAAACAGGAATAAAAGCCAGTATGATATTTATCATGGTGAGGCATTTCTAATAAAGGTTTAAAGGAGGAAAAAAGCTCTGAATGAAACGATCCCAGTGATATAGTATAAGTAAAATAATCACAAAATTATCAAAATAAAATGTTTATAAGTATATTGACATGTAAATAAATAAATAAAATGTTGTATGTGGATTCAGTCAGTCATGACCAACTTCTTTGGCTAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU339574 True 1035 lncRNA 0.38 2 1036036 1044620

Neighbor

gene id symbol gene type direction distance location
CI01000086_01005334_01006342 NA coding downstream 29694 1004584 ~ 1006342 (-)
CI01000086_00978789_00999074 NA coding downstream 36296 978540 ~ 999740 (-)
CI01000086_00949574_00963179 NA coding downstream 72776 948026 ~ 963260 (-)
CI01000086_00935341_00936321 NA coding downstream 96848 935052 ~ 939188 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L coding downstream 439297 587765 ~ 596739 (-)
CI01000086_01069219_01094068 AGO3, EIF2C3, I2C3 coding upstream 24387 1061523 ~ 1094251 (-)
CI01000086_01101333_01138683 NA coding upstream 56140 1100760 ~ 1138683 (-)
CI01000086_01193934_01219331 NA coding upstream 149095 1193715 ~ 1219440 (-)
CI01000086_01237966_01253245 NA coding upstream 193291 1237911 ~ 1253288 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding upstream 213306 1257926 ~ 1260025 (-)
G299266 NA non-coding downstream 33417 1002265 ~ 1002619 (-)
G299221 NA non-coding downstream 159868 853604 ~ 876168 (-)
G299218 NA non-coding downstream 191857 843740 ~ 844179 (-)
G299096 NA non-coding downstream 309643 694096 ~ 726393 (-)
G299049 NA non-coding downstream 403710 629721 ~ 632326 (-)
G299128 NA non-coding upstream 14384 1059004 ~ 1060093 (-)
G299283 NA non-coding upstream 133197 1177817 ~ 1237208 (-)
G299299 NA non-coding upstream 184301 1228921 ~ 1231136 (-)
G299331 NA non-coding upstream 296823 1341443 ~ 1346880 (-)
G299173 NA other downstream 268157 765617 ~ 767879 (-)
G298872 NA other downstream 499726 535023 ~ 536310 (-)
G299107 NA other upstream 31526 1126738 ~ 1126798 (-)
G299528 NA other upstream 623586 1668206 ~ 1695177 (-)
CI01000086_01852638_01897719 UBR5 other upstream 849294 1852146 ~ 1897719 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 1319711 2364331 ~ 2373059 (-)

Expression


Co-expression Network