G298381


Basic Information

Item Value
gene id G298381
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1172156 ~ 1176916 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU338761
TCTTGGAGCAGCTTCTTCATTCACTGACCGCTCTTGCTGTTTGCAGTCTGGCTGGCAGAGGTCTCTGCATTTAAAGTCCAACTTCGGCTGTTTCATAGCTAACCTTTAAAGGTCTCATTGGTTTTTCCATTCCAGCTGTTTTTGGAGTTTGCCTTGGAGCAACATCGACGGAGTCGTCTTTCCTTTTCCTGAACAAGCGTGCAATTGCAGCAAGGTTCACGCTTCGGCATTGCACAACCTTTCGGGAAGTTCGTTTCATCCGTGTGGTGCACAAAAACAGCAGCGATGATCATCAGGCTCGGCAGACTGACTCCTGGATACTTCCGTCTCCTGCAGAGGCAGGTAGCAGGAGAGGTTCAGGCCCCTGTGCATGACCGCTCCGTCAACCAGATCGCCATGATGCTGGCCATCATGGGCCTTAGCCTGTCCTACTACAGTGCCAAACAGATGACAGAGNNNNNNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU338761 True 465 TUCP 0.50 3 1172156 1176916

Neighbor

gene id symbol gene type direction distance location
CI01000086_01150842_01165271 DHDDS coding upstream 6400 1150842 ~ 1165922 (+)
CI01000086_01098078_01098642 NA coding upstream 73351 1097935 ~ 1098805 (+)
CI01000086_01053732_01056868 NA coding upstream 115037 1053357 ~ 1057119 (+)
CI01000086_01044588_01047516 NA coding upstream 124555 1044469 ~ 1047601 (+)
CI01000086_01030611_01038651 NA coding upstream 133485 1030271 ~ 1038748 (+)
CI01000086_01265644_01273085 NA coding downstream 88448 1265364 ~ 1273446 (+)
CI01000086_01371003_01393249 SLC9A1 coding downstream 194087 1371003 ~ 1393807 (+)
CI01000086_01413340_01416793 MAN1C1 coding downstream 236379 1413295 ~ 1416815 (+)
CI01000086_01492811_01493179 NA coding downstream 315895 1492811 ~ 1494000 (+)
CI01000086_01506402_01526965 NA coding downstream 329343 1506259 ~ 1527057 (+)
G298366 NA non-coding upstream 24289 1136660 ~ 1147867 (+)
G298377 NA non-coding upstream 26600 1145280 ~ 1145556 (+)
G298363 NA non-coding upstream 45358 1123100 ~ 1126798 (+)
G298207 NA non-coding upstream 56772 1061482 ~ 1115384 (+)
G298382 NA non-coding downstream 2247 1179163 ~ 1184457 (+)
G298386 NA non-coding downstream 11492 1188408 ~ 1224346 (+)
G298413 NA non-coding downstream 52114 1229030 ~ 1229434 (+)
G298391 NA non-coding downstream 61005 1237921 ~ 1260638 (+)
G298214 NA non-coding downstream 242526 1419442 ~ 1427548 (+)
G298208 NA other upstream 192046 947191 ~ 980110 (+)
CI01000086_00499939_00501377 NA other upstream 670040 498625 ~ 502116 (+)
G298529 NA other downstream 699974 1876890 ~ 1881453 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 1630667 2806368 ~ 2845762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010293 FQ323156.1 non-coding NC_007127.7 CM002900.2 51192655 ~ 51214029 (+)