G299283


Basic Information

Item Value
gene id G299283
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1177817 ~ 1237208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339748
CTCTGACGAACTAACAAGCTATGGACTAGCCTGAGATAAAACATCTGTCCTGTCAGCACATTTCCACTCCTCCCCTTGACTACAGCCACTTACATTCCCGTCGACAGTCAAAACAACAAGTTTTTAAACAAGCTTTTAGTTGTACAGAAGGGCACGCTTCTGCTCTCCATGAGCGAGTCCTGCTGCATGAGACTCTTCCTGCTAGTTTAGGTGGAGATCTGGTGCGAATGAGGAGGAGAGACTCTGGAAAAAAAAACTAAAAAAAACTAAAAATTAAAAATTTATAGACATAAAATGACAATGTAAACAACAAAATTACAAACACTTTAAAATTAAAATGAAAAACAATATGATAAAAAGGAAATCAATGATAATAAAGTGTTTTTGATTGAAGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>TU339750
ATTTTGTTTTACTGACGCTTCTGCTCTCCATGAGCGAGTCCTGCTGCATGAGACTCTTCCTGCTAGTTTAGGTGGAGATCTGGTGCGAATGAGGAGGAGAGACTCTGGAAAAAAAAACTAAAAAAAACTAAAAATTAAAAATTTATAGACATAAAATGACAATGTAAACAACAAAATTACAAACACTTTAAAATTAAAATGAAAAACAATATGATAAAAAGGAAATCAATGATAATAAAGTGTTTTTGATTGAAGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>TU339747
ATTTTGTTTTACTGACGCTTCTGCTCTCCATGAGCGAGTCCTGCTGCATGAGACTCTTCCTGCTAGTTTAGGTGGAGATCTGGTGCGAATGAGGAGGAGAGACTCTGGAAAAAAAAACTAAAAAAAACTAAAAATTAAAAATTTATAGACATAAAATGACAATGTAAACAACAAAATTACAAACACTTTAAAATTAAAATGAAAAACAATATGATAAAAAGGAAATCAATGATAATAAAGTGTTTTTGATTGAAGAAATGAAGTATTGCAGTTGTCCTGAGTCTCATTCAGGTTGTGGTTTTGGACGGGTCTCTTCATGTTGCTGCATATCAAATCCATTAGTTTATTTGAGTTGTTTCCTGCACTAAATGAGGCTCTAATATATAAGTCAAATAATGTGTATGCATTCACCGTAACAATGTATTCAACGTAAATGAAACAAAGCTTTACAATTATTCAATGAAACCTGTTTTGTTTGATTTTTTTTTTTTAGTAATTTAATAGAACCCGCTGTTACCAATAAACTGTGGTCAAACTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339748 False 430 lncRNA 0.33 3 1177817 1211607
TU339750 False 291 lncRNA 0.27 3 1177817 1237208
TU339747 True 541 lncRNA 0.32 2 1208937 1237208

Neighbor

gene id symbol gene type direction distance location
CI01000086_01101333_01138683 NA coding downstream 39134 1100760 ~ 1138683 (-)
CI01000086_01069219_01094068 AGO3, EIF2C3, I2C3 coding downstream 83566 1061523 ~ 1094251 (-)
CI01000086_01005334_01006342 NA coding downstream 171475 1004584 ~ 1006342 (-)
CI01000086_00978789_00999074 NA coding downstream 178077 978540 ~ 999740 (-)
CI01000086_00949574_00963179 NA coding downstream 214557 948026 ~ 963260 (-)
CI01000086_01237966_01253245 NA coding upstream 703 1237911 ~ 1253288 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding upstream 20718 1257926 ~ 1260025 (-)
CI01000086_01296658_01297947 NA coding upstream 58622 1295830 ~ 1298059 (-)
CI01000086_01313364_01320865 NA coding upstream 75814 1313022 ~ 1322014 (-)
CI01000086_01670242_01672517 NA coding upstream 432580 1669788 ~ 1674496 (-)
G299128 NA non-coding downstream 117724 1059004 ~ 1060093 (-)
G299119 NA non-coding downstream 133197 1036036 ~ 1044620 (-)
G299266 NA non-coding downstream 175198 1002265 ~ 1002619 (-)
G299221 NA non-coding downstream 301649 853604 ~ 876168 (-)
G299331 NA non-coding upstream 104235 1341443 ~ 1346880 (-)
G299321 NA non-coding upstream 116198 1353406 ~ 1354349 (-)
G299322 NA non-coding upstream 133803 1371011 ~ 1373189 (-)
G299323 NA non-coding upstream 143983 1381191 ~ 1385500 (-)
G299345 NA non-coding upstream 163727 1400935 ~ 1401281 (-)
G299107 NA other downstream 51019 1126738 ~ 1126798 (-)
G299173 NA other downstream 409938 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 581188 587765 ~ 596739 (-)
G298872 NA other downstream 641507 535023 ~ 536310 (-)
G299528 NA other upstream 430998 1668206 ~ 1695177 (-)
CI01000086_01852638_01897719 UBR5 other upstream 656706 1852146 ~ 1897719 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 1127123 2364331 ~ 2373059 (-)
G299598 NA other upstream 1628474 2865682 ~ 2868103 (-)

Expression


Co-expression Network