XLOC_010840


Basic Information

Item Value
gene id XLOC_010840
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32558055 ~ 32559783 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022185
CCAGGCTCTTTGCCAAGTGGACGCAGAGGCGCGCACCTGAGCTCCGCCTCTCGACCACGCTTATTGGCTGAGAAAGGATGATGGACGCGCTTTTTTGAGGCAGCTTTCAGCTGATTGGACGCTCGAGAGTCTTAACAAACACTGCCTTCTTCCCTCAAAAGAACTCCGTGTCCTGCAGCACCTCTGAAATGTGAGGGACCGACGGGCCAACAAGACCAGGGCGAAGAACATCAAAGgttCTGGGATTTATTCGTAAAATAAAGGGAAACTTTTGTAGTCTTTCTAGCGTAATGTTTGCTGGTCAAGCTAAGAAAATTATACTTATACATTGTTAATTTAACAGAGAAtcttctgagttttttttttgctaaaatttaACTATAAAGTGAAAAGGTGTTGACAAACTTATGGAAAAATGGGCGCTTGACTCATTAAAGTGTTAGATTTTGAAGAGCTGACATAAACAAAagcttaaattaataaaagttttgGTCACAAAATAACATTGATGATCAGaaataaattatcattttagCAGATtagtaaagaataaaaatgtgGTAACTAACTTcacaaagtaaataataaaaataataacctcCGAAAGAAGAGGAAAATAAAGGCAGatgattcatttgtttaattcacTATAAATGTAATCATAAAGCATAAAGAACTCAGAGAATGACAAACGAAACATATTGctaaataattttgtattttactttaaaaaataaagagcaGCATAAAGTGTACAATTATTGGATGCCATAAACAATTAACAACTAGTATAAGAGAGGGAAGTAAaggattaaacatttaaaagactTGTTCACTGAACACATgggttaaaataaaatacttcaaaCTAAAATGATATATAAGATTTATAAAaacttttataattaaataaagacaTAAATGTGGCACAATATGTAAATTATTTAGATATATAGACCACATTTTATTGAttagataaaacaaaaaattcagATTATCTAAACAGAAGTTACATGATTTACAATCAGAAGCACTTGTGCTGCAAACTTAGTGACTTTCTAAACTGACTAGtaagtatttaagtatttttactttttttgttatctATGTTAATTACAATTAAACAGGCTAAACCATTATTAGGCAAttccaaacattttaaataagcagttacGCTTCTCTTTTAACCACAACTGTCTCTATAAATcctaatagaaaataaaaaaaactttttcttttgGGGTCTGCATGGTGTACTCACGTCAAAAGAATATTTCAAAGAGGAACAGTGGGCCGTTTGGGACCGCAGGTGTCTAAAGCTGACCAGCTGGCTTCTCTGTGAGCCTCTGTAAAGAAAAGCACACGACATTGTCCGAGGAGGGGGACATTTTTTCAGCGGCGCTGCTGGTTGCTATAGAGAGCAGTAAATTAAACAACGCCTCATACGTCACCAGCATCGCCTCCTCTGGACGGCCCTACGTAAATCAGCAAGGGTAATGGACAAAAGACAAAAAGGAGCAAGGAAGACAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0007423 sensory organ development biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00521 Streptomycin biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022185 True 1530 lncRNA 0.35 2 32558055 32559783

Neighbor

gene id symbol gene type direction distance location
XLOC_010839 NA coding downstream 168581 32387576 ~ 32389474 (-)
XLOC_010838 NA coding downstream 179379 32348773 ~ 32378676 (-)
XLOC_010837 mms22l coding downstream 253275 32281200 ~ 32304780 (-)
XLOC_010836 calhm6 coding downstream 324592 32226664 ~ 32233463 (-)
XLOC_010835 calhm5.1 coding downstream 336743 32216552 ~ 32221312 (-)
XLOC_010841 fbxl4 coding upstream 6435 32566218 ~ 32582798 (-)
XLOC_010842 CR848729.1 coding upstream 14327 32574110 ~ 32574236 (-)
XLOC_010843 NA coding upstream 27655 32587438 ~ 32627440 (-)
XLOC_010844 faxcb coding upstream 70291 32630074 ~ 32649929 (-)
XLOC_010845 coq3 coding upstream 92567 32652350 ~ 32673028 (-)
XLOC_010626 CR392024.2 misc downstream 11662880 20895112 ~ 20895175 (-)
XLOC_010831 CR854927.2 non-coding downstream 394260 32152199 ~ 32163795 (-)
XLOC_010829 NA non-coding downstream 508062 32043389 ~ 32049993 (-)
XLOC_010828 CR854927.1 non-coding downstream 518992 32028079 ~ 32039063 (-)
XLOC_010847 NA non-coding upstream 182559 32742342 ~ 32819765 (-)
XLOC_010852 BX537338.1 non-coding upstream 955983 33515766 ~ 33541958 (-)
XLOC_010853 NA non-coding upstream 1001080 33560863 ~ 33592580 (-)

Expression


Co-expression Network