G298382


Basic Information

Item Value
gene id G298382
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1179163 ~ 1184457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU338762
AACACACTACTAGCTCCGCCCCTTTATTTTGCATATGCCTTGGGTGGGAATTATTTAAATGAGGAATATTGAGACGTGTTCGTTCCCAGAAGAAAACTCAAGACTACAATGGAGGCGTTTCAGGGAGTTCATATATACTCTGAGCAGAGTTGATTTAACTCTGGAGATTTTTCTGTGTAGTAATTATGTCTGATTTTTAATTTCCAACCTATTTTGGGTTCATTTTNNNNNNNNNNNNNNNNAATTTTTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU338762 True 252 lncRNA 0.33 3 1179163 1184457

Neighbor

gene id symbol gene type direction distance location
CI01000086_01150842_01165271 DHDDS coding upstream 13407 1150842 ~ 1165922 (+)
CI01000086_01098078_01098642 NA coding upstream 80358 1097935 ~ 1098805 (+)
CI01000086_01053732_01056868 NA coding upstream 122044 1053357 ~ 1057119 (+)
CI01000086_01044588_01047516 NA coding upstream 131562 1044469 ~ 1047601 (+)
CI01000086_01030611_01038651 NA coding upstream 140492 1030271 ~ 1038748 (+)
CI01000086_01265644_01273085 NA coding downstream 80907 1265364 ~ 1273446 (+)
CI01000086_01371003_01393249 SLC9A1 coding downstream 186546 1371003 ~ 1393807 (+)
CI01000086_01413340_01416793 MAN1C1 coding downstream 228838 1413295 ~ 1416815 (+)
CI01000086_01492811_01493179 NA coding downstream 308354 1492811 ~ 1494000 (+)
CI01000086_01506402_01526965 NA coding downstream 321802 1506259 ~ 1527057 (+)
G298366 NA non-coding upstream 31296 1136660 ~ 1147867 (+)
G298377 NA non-coding upstream 33607 1145280 ~ 1145556 (+)
G298363 NA non-coding upstream 52365 1123100 ~ 1126798 (+)
G298207 NA non-coding upstream 63779 1061482 ~ 1115384 (+)
G298386 NA non-coding downstream 3951 1188408 ~ 1224346 (+)
G298413 NA non-coding downstream 44573 1229030 ~ 1229434 (+)
G298391 NA non-coding downstream 53464 1237921 ~ 1260638 (+)
G298214 NA non-coding downstream 234985 1419442 ~ 1427548 (+)
G298234 NA non-coding downstream 297984 1482441 ~ 1486554 (+)
G298381 NA other upstream 2247 1172156 ~ 1176916 (+)
G298208 NA other upstream 199053 947191 ~ 980110 (+)
CI01000086_00499939_00501377 NA other upstream 677047 498625 ~ 502116 (+)
G298529 NA other downstream 692433 1876890 ~ 1881453 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 1623126 2806368 ~ 2845762 (+)

Expression


Co-expression Network