G299299


Basic Information

Item Value
gene id G299299
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1228921 ~ 1231136 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339768
GCCGGTGTTGCAATGAAACGTTCTATTAAGTGTCGCTTCTTGTTAGTGTATATTCTTTGGCTGAACTGCGGAAGTTTAGTTTCACAAAAGGGCTGGATTTGGTTTAGAGGATGGGCTCTTTAGGGCGAGGCAACCTTTATTAGAATGACACTCAGCAGATCATTCATTCAACATCGACACACGGGGAAACTTCATCGTTCCTGCTGAATACTCGAGGTAATGCTTTTATTCAACCCTTAACCAGTCCCTCCGGGATTGCGCGATCGCTGAATTTATCGCAAAATCAAGTAAACTCCGCAGTAATCGGAGGATCTTGCATTTTTTTTTCCTAATTTCCGCAGATTTTGGGTCATCGCAACATGCATTTAGTCAAGTCAATTGAGCTGCGTAGCTCGGACCAACAACAGACAGCGCGTCGCGACTGGAGTTGAGAGCAGCGGGTCCATCTCGATCACAAAACAACATTTCACGTGCGCTGAGAAGAAACCGCTTGAATTCACCGCAGAATTAATTTCGTCGCTGTGAAATCTTGTGAGAAGCGTTCACATTCTTCGCAGAATTCTTTATTAAACCACCGATATCAGATCTAACGGTGCCGCTGTGGACACTGATCTGATATTTGATCTGATATCTGTGGTTTAACAGAGAATTCTGCGACGAATTTAATCTAAATGCTTCTTACAAGATTTCACAGCGATGTTATTAATTCTGCAGTGAATTCAAGCGGTTTCTTGTGTAATCTGGAAACCATGGGAAAACATTGTGACACTAATAAACAGAAATAACTTGTGGCAGAAATGGTCTAATGTTTTCGAGTGCTTCACACAACTTTTCCCAGCACTTCAAAGCTTTAAATATTGCCCAGTTTAAATGTTATTTTTAATGTTATGTCCAAAACATTATTTGTTCATCCTTCATACTTTGTCCCCATTTGTAAAACTAAAGGTTTCACGATGTAGGACAGCAAACACTTATTTAGAAATAAAAAAGAATAAATTACCACTGTAGTAGATGCTGCAGAGGAGCACTTATTTCCACACCCTAGTATATATTTTTAATATTTATTAATAATTAAAAAAAAAAAAAAAAAGTTAATATCTGCATCTCAACTCAAGCTCAGTGCTTTTCTGTCAGTCCTCACAGCACTGCCAAATCAGGCGCTGGTGCCACCTTAGAACTTAAAGGGTTAGTTCACCCAAAAATGAAGACCCTGTCTGTCATTAATTACTCACCCTCATGTGGTTCCACACCCGTAAGACATTCATTCATCTTCAGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCCTGGATTGACAGCAAGATAATTAACACTTTCAGATGCCCAGAAAGCTACTAAAGACATATTTAAAACAGTCCATGTGACTACAGTGTGACTAACCTTAATGTTACGAAGCGACAAGAATATTTTTTGTGTGCCAAAAAAAAATAATAATAAAATAAAAATAACGACTTTATTCAACAATATACGGAAGCCCTAAACGGCCATGGATTATTTTTTTCTATCTTGTTTTGTCGTGATCACGAGATAACAAAAGTTGTTTTCTCTCATCTCGACATAAAAGTTCTTTTTACAGTGATTGATTCTGAAACACACTGTACCCGGATTCTACTGTTGCTATAGTAACGAACACAACTTTCACGCGCATCTGATCGACGGATAAATCATGCGCTCTTATATCTTGTGGATATTTCAGCAAAATGTTTACTTCACTTAATAATAAAGTTTACAATAAATAAATACATATAGGCTAATCAATCACTGTTCAATAAATGTACGCTAAACATTTTATTTGTGTAATTAACATGTTTAATGATCAACAGAGCATTCAACATCTCAAGCGCAGCCAGAGTACCTTCAGAAAGATGCCAGATTATTCTATAATTCTATAAATTATTCGATTAAACCCACTTTATTTTCCTCATTCGTTTGAAATAAAATTATATTACATAATGTGTTTGTTATTTTTATTCGTCATGTAGGATAGGCTGTGATATCATTAAACGGTCTTCCTCCAGTTTCCATTAAAAAGAGGTGCAATACTCCAGATTTCCAAAAAACAAAACTTTAATCCAGTGGATATAGGCTAAAACAATCTTGGGATGCTGTTTGAG
>TU339769
GCCGGTGTTGCAATGAAACGTTCTATTAAGTGTCGCTTCTTGTTAGTGTATATTCTTTGGCTGAACTGCGGAAGTTTAGTTTCACAAAAGGGCTGGATTTGGTTTAGAGGATGGGCTCTTTAGGGCGAGGCAACCTTTATTAGAATGACACTCAGCAGATCATTCATTCAACATCGACACACGGGGAAACTTCATCGTTCCTGCTGAATACTCGAGATTTTGGGTCATCGCAACATGCATTTAGTCAAGTCAATTGAGCTGCGTAGCTCGGACCAACAACAGACAGCGCGTCGCGACTGGAGTTGAGAGCAGCGGGTCCATCTCGATCACAAAACAACATTTCACGTGCGCTGAGAAGAAACCGCTTGAATTCACCGCAGAATTAATTTCGTCGCTGTGAAATCTTGTGAGAAGC
>TU339766
GCCGGTGTTGCAATGAAACGTTCTATTAAGTGTCGCTTCTTGTTAGTGTATATTCTTTGGCTGAACTGCGGAAGTTTAGTTTCACAAAAGGGCTGGATTTGGTTTAGAGGATGGGCTCTTTAGGGCGAGGCAACCTTTATTAGAATGACACTCAGCAGATCATTCATTCAACATCGACACACGGGGAAACTTCATCGTTCCTGCTGAATACTCGAGATTTTGGGTCATCGCAACATGCATTTAGTCAAGTCAATTGAGCTGCGTAGCTCGGACCAACAACAGACAGCGCGTCGCGACTGGAGTTGAGAGCAGCGGGTCCATCTCGATCACAAAACAACATTTCACGTGCGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU339768 False 2150 lncRNA 0.37 2 1228921 1231136
TU339769 False 415 lncRNA 0.46 2 1230531 1231136
TU339766 True 352 lncRNA 0.47 2 1230594 1231136

Neighbor

gene id symbol gene type direction distance location
CI01000086_01193934_01219331 NA coding downstream 9481 1193715 ~ 1219440 (-)
CI01000086_01101333_01138683 NA coding downstream 90238 1100760 ~ 1138683 (-)
CI01000086_01069219_01094068 AGO3, EIF2C3, I2C3 coding downstream 134670 1061523 ~ 1094251 (-)
CI01000086_01005334_01006342 NA coding downstream 222579 1004584 ~ 1006342 (-)
CI01000086_00978789_00999074 NA coding downstream 229181 978540 ~ 999740 (-)
CI01000086_01237966_01253245 NA coding upstream 6775 1237911 ~ 1253288 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding upstream 26790 1257926 ~ 1260025 (-)
CI01000086_01296658_01297947 NA coding upstream 64694 1295830 ~ 1298059 (-)
CI01000086_01313364_01320865 NA coding upstream 81886 1313022 ~ 1322014 (-)
CI01000086_01670242_01672517 NA coding upstream 438652 1669788 ~ 1674496 (-)
G299128 NA non-coding downstream 168828 1059004 ~ 1060093 (-)
G299119 NA non-coding downstream 184301 1036036 ~ 1044620 (-)
G299266 NA non-coding downstream 226302 1002265 ~ 1002619 (-)
G299221 NA non-coding downstream 352753 853604 ~ 876168 (-)
G299331 NA non-coding upstream 110307 1341443 ~ 1346880 (-)
G299321 NA non-coding upstream 122270 1353406 ~ 1354349 (-)
G299322 NA non-coding upstream 139875 1371011 ~ 1373189 (-)
G299323 NA non-coding upstream 150055 1381191 ~ 1385500 (-)
G299345 NA non-coding upstream 169799 1400935 ~ 1401281 (-)
G299107 NA other downstream 102123 1126738 ~ 1126798 (-)
G299173 NA other downstream 461042 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 632292 587765 ~ 596739 (-)
G298872 NA other downstream 692611 535023 ~ 536310 (-)
G299528 NA other upstream 437070 1668206 ~ 1695177 (-)
CI01000086_01852638_01897719 UBR5 other upstream 662778 1852146 ~ 1897719 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 1133195 2364331 ~ 2373059 (-)
G299598 NA other upstream 1634546 2865682 ~ 2868103 (-)

Expression


Co-expression Network