Gene
RNA
| Item | Value |
|---|---|
| gene id | G299331 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000086 |
| NCBI id | null |
| chromosome length | 2920448 |
| location | 1341443 ~ 1346880 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU339813 | False | 354 | lncRNA | 0.52 | 2 | 1341443 | 1346783 |
| TU339815 | False | 451 | lncRNA | 0.51 | 2 | 1341443 | 1346880 |
| TU339811 | True | 286 | lncRNA | 0.51 | 2 | 1341511 | 1346783 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000086_01313364_01320865 | NA | coding | downstream | 19429 | 1313022 ~ 1322014 (-) |
| CI01000086_01296658_01297947 | NA | coding | downstream | 43384 | 1295830 ~ 1298059 (-) |
| CI01000086_01257926_01260025 | SERPINB1L4, SERPINB14 | coding | downstream | 81418 | 1257926 ~ 1260025 (-) |
| CI01000086_01237966_01253245 | NA | coding | downstream | 88155 | 1237911 ~ 1253288 (-) |
| CI01000086_01193934_01219331 | NA | coding | downstream | 122003 | 1193715 ~ 1219440 (-) |
| CI01000086_01670242_01672517 | NA | coding | upstream | 322908 | 1669788 ~ 1674496 (-) |
| CI01000086_01852638_01897719 | UBR5 | coding | upstream | 505266 | 1852146 ~ 1897719 (-) |
| CI01000086_01915013_01921794 | AZIN1A | coding | upstream | 568133 | 1915013 ~ 1921794 (-) |
| CI01000086_01948087_01983560 | SPIRE1 | coding | upstream | 601127 | 1948007 ~ 1983560 (-) |
| CI01000086_01994840_02008387 | TPPP | coding | upstream | 647715 | 1994595 ~ 2008387 (-) |
| G299283 | NA | non-coding | downstream | 104235 | 1177817 ~ 1237208 (-) |
| G299299 | NA | non-coding | downstream | 110307 | 1228921 ~ 1231136 (-) |
| CI01000086_01069219_01094068 | AGO3, EIF2C3, I2C3 | non-coding | downstream | 268779 | 1061523 ~ 1094251 (-) |
| G299128 | NA | non-coding | downstream | 281350 | 1059004 ~ 1060093 (-) |
| G299119 | NA | non-coding | downstream | 296823 | 1036036 ~ 1044620 (-) |
| G299321 | NA | non-coding | upstream | 6526 | 1353406 ~ 1354349 (-) |
| G299322 | NA | non-coding | upstream | 24131 | 1371011 ~ 1373189 (-) |
| G299323 | NA | non-coding | upstream | 34311 | 1381191 ~ 1385500 (-) |
| G299345 | NA | non-coding | upstream | 54055 | 1400935 ~ 1401281 (-) |
| G299348 | NA | non-coding | upstream | 56807 | 1403687 ~ 1404260 (-) |
| G299107 | NA | other | downstream | 214645 | 1126738 ~ 1126798 (-) |
| G299173 | NA | other | downstream | 573564 | 765617 ~ 767879 (-) |
| CI01000086_00587995_00596565 | BRAFLDRAFT_115002, ETFB, ETFB.L | other | downstream | 744814 | 587765 ~ 596739 (-) |
| G298872 | NA | other | downstream | 805133 | 535023 ~ 536310 (-) |
| G299528 | NA | other | upstream | 321326 | 1668206 ~ 1695177 (-) |
| CI01000086_02366362_02373059 | SLC6A20 | other | upstream | 1017451 | 2364331 ~ 2373059 (-) |
| G299598 | NA | other | upstream | 1518802 | 2865682 ~ 2868103 (-) |
