G299323


Basic Information

Item Value
gene id G299323
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1381191 ~ 1385500 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339802
TTTATCTTTACTTTTAAAAAAAGGCCTCAGTTTGATATTTTGATTAAATCTAATGCAGTCATTTTGAAGTGTGGCATAAGTGTCTAAATACTTTTTGGGGTCAATGTATATCTGACATATAGACCACACGTCACAATAATCACAAACATGTCCTGAACATAAAACACAAATAGGGTAACACAAACCTCGCAATTTGAGACCGTCCCTTATGTCCTTGTTTAAATGTGTGAATAGAGACACACCATTTAAACCTGACACCACATGATTTTAACACCAGAACAAAGACTAGAAGACCAACATTCTTCCAGCGGCCTCCACAAAGGAGAGAAACTTCCTGGAATCTTCCATTGTAATGAATTCTCCAAAGTAACTCACCACTGGCACAAAACTCATGAGAAGATTAGAGCTGCGAAGCCATTCGCATCTTTAACCTGAGGAGAGCGATGATGCATTGACCCTAAACCACTCAAGATATGCTAAAACAACTCCGATACATCAGCCCCCATTAGCAAATCCACGAAACAAACATAGTAAGATTTGGATCTGACCATTTCTGTGTACTGTACACAGAGTCTACGCTGGTCCTGCTCTTTTATAACACTGCTTCCACAAAAGCAGAAAGACTCACATTACGGTATGAATCATTCAAAACATAAATGAAGAGGGTTACTTTCACCACTGCCATTTTCAGCACCTCATGCATATCTCAGAGCCTTCAGGGCTCCTGCAGCTCTCCCAAAGAGCCGTCAGCTGAAGGAATAATGGTGTAAAACAATCACAGCAAAAGCGAATAAACGATTCGAGACTGTTCGATAATCCACCACCCAGTATAACCTGATGGGGCGTAAGGCTTTTCAATAAACAAGTCTGGCCCTGTTTCCACCTAGTATTAAAATGCGTTTTGGTCGATCGGATCACAAGTGGACAACGCTAAATACAGGTGTAAACGGGGTCTAAAATGTTTTGAGCTTGTCCACTTTCGACCACTTCCACAGGTAGCTGAAAATGCATCCGACCGGATTGCTTTTGTAGTGTAAACTTGTGATTGAAAAGCCACTAAAAGCCGCCTACTCTCCAACTACTGACCTAATGCGTAAACATTATGAGAAGCGCGCTAGCCAGACGGGATTTAAACTTTGTCGGCTGAAGACCTAATTTTTGTTTGAAGTCAAAAAAACGTACCGAGCACAACATTCTCTCACCATTCCTGATTTCTAACACACTCAGCGTTCGGCCGGTCTTGCAGGTGTCAGAACAGAAATGAAAGCTGATGCTCTCTGTATGTTTTTCTGTCGCCTCCGGGCACATTTACATGTAAATTGCGCAAGCTTAGTTTGTCTATTATATTGAAAGATCTGAAAAACCCTTACATTTACCCGCCCATAGACCCTCCCCTCGAAGAAATCAGGACAGAAGTGGTTGAAAGTGGACAAAAGAAACTAAAATAACAGGTGTAAGCCGAGTATGGCCTTCCGTATTCAACGTACGCAGAAAGTGTAAAACTCTTGCAGTTCACAAAGCTTACGCTACGTCATGCGCCTTCCCTGTTAAAAAAAGTGTAACTGACGCGACACCAGTTTACACTTTCTTTGTAACCTGTATACGGAAAGCGGTCTGGTGGAAGCTCGATATTTGACTTCATGACTTGTTAAATACGGATATTTATTTAACACAAACGCATCGTTTCACTTCAGAAGGCCTTTATTAACCCTCCGGAGCTGTGTGGCGCACATATTTATGATGGGTGGATGTGGATGGAAGCACTTTCTTCAGCTCATACTCATTGAACCCTATCACTGCCACTATAAAGCTTGGATGCGTCAGGATATTTATTAATATTTCTGCAATTATGTTCATCAGAAAGAAGAAAGTCATATATAACTAGAACGACTTGAGGGAGGTCATGCAAACTGTGGTGTCTCTTTACTCACCAAGAACACGAGCCACCAGAGAGAGAATAACGGTCATGATGACGAAGGTCCAGTTCCAGCGGTGCGGCCCGGCCACTGTCGACACTCCCAAGAAGATAAAGATGAGCGTGTCGCTCACGCTGCTCCACATCTTCAAGAAGTACTTGATGGTGGTGTGGGATTTATGGGATATGTTGGCCTCCACGTAGGGACGCGTGACGGCACCACACGCTATTAGCCTGGAAGCAGAATAATCGCCTACATTATTGATCTGATCGGATAAACCAGGACAGCTTAAAAAGGCATTTTGGTCAGCCAGTTTGGGCTGCGTGAAATGGCCAAAAAAAGATTATCACAGTATTTTTTTCCATTTCATTCAATATTGATGTTTATCACAATATTCATTTCATACCATTAATGGGGAATGAAATGCATTCCATGTTTGTTAGACCTTGAGAATGAACGTAAACATAACTTGTTTGTTAATAATACAGCATTTACTACTAATTCAAAATGGCCGACACCCAAAATGGCCGATATGGAAAAATTGGATATAATTAGACTCGGCTGCCCCGAATCTGACGAGACCACTTATATAATTTTCAGGCAAACCATTCAGAAGATTTAAGCAAAAAAGGCAATTTTTCATATCTCCTGACCAGTCGGTTGCGCTGTGCCGAAACGCTACATGTAGCCTCAGGTCATGCTTGGGATGACATGTACCAAGTTTGGTCTGAATACATTAAAGCGTTGTGGACATATAGCCTTGCATTCAATTTGGCATGCTCTTCGTCAAATTCATTTGCGCATTATTTGAGAACAGTTGGGTTTATCAAAAACCTTTTGATAACTTTTTGCCAGTTTTGATGGAAAATTATGTCATAGGATGCAATCAAATCATCTTAAGCCAAGGAATAAGAGGAAAAAATTATTTTGTTCTAATTATGGTTCAAAAGTTATTAGCATAAATGTAAGTGAAACTTTAGACAGTTGGTGGTGCTAGTGGGATTGAGTTAGAGGCTCCAAATTTGCAGTGGGGAATGTTTGGATTGTCCTCTATCTGTGTGCCAAATTTCACAACTTTTTACCATACAGTTCTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU339802 True 3011 lncRNA 0.41 2 1381191 1385500

Neighbor

gene id symbol gene type direction distance location
CI01000086_01313364_01320865 NA coding downstream 59177 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 83132 1295830 ~ 1298059 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 121166 1257926 ~ 1260025 (-)
CI01000086_01237966_01253245 NA coding downstream 127903 1237911 ~ 1253288 (-)
CI01000086_01193934_01219331 NA coding downstream 161751 1193715 ~ 1219440 (-)
CI01000086_01670242_01672517 NA coding upstream 284288 1669788 ~ 1674496 (-)
CI01000086_01852638_01897719 UBR5 coding upstream 466646 1852146 ~ 1897719 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 529513 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 562507 1948007 ~ 1983560 (-)
CI01000086_01994840_02008387 TPPP coding upstream 609095 1994595 ~ 2008387 (-)
G299322 NA non-coding downstream 8002 1371011 ~ 1373189 (-)
G299321 NA non-coding downstream 26842 1353406 ~ 1354349 (-)
G299331 NA non-coding downstream 34311 1341443 ~ 1346880 (-)
G299283 NA non-coding downstream 143983 1177817 ~ 1237208 (-)
G299299 NA non-coding downstream 150055 1228921 ~ 1231136 (-)
G299345 NA non-coding upstream 15435 1400935 ~ 1401281 (-)
G299348 NA non-coding upstream 18187 1403687 ~ 1404260 (-)
G299351 NA non-coding upstream 24038 1409538 ~ 1409853 (-)
G299373 NA non-coding upstream 48305 1433805 ~ 1435707 (-)
G299394 NA non-coding upstream 77544 1463044 ~ 1463405 (-)
G299107 NA other downstream 254393 1126738 ~ 1126798 (-)
G299173 NA other downstream 613312 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 784562 587765 ~ 596739 (-)
G298872 NA other downstream 844881 535023 ~ 536310 (-)
G299528 NA other upstream 282706 1668206 ~ 1695177 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 978831 2364331 ~ 2373059 (-)
G299598 NA other upstream 1480182 2865682 ~ 2868103 (-)

Expression


Co-expression Network