XLOC_010843


Basic Information

Item Value
gene id XLOC_010843
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32587438 ~ 32627440 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021814
TAACAGCAACATGTTCTTGTCTCCACTTTTTGATGGAGTCTCTCTTTTGTGTGTTTATCACTGAGGGAGGATTCACCTGGGGCAGCCGAGAAAGAGACAGGCCACCACACATGacaggagagacagagagagggagagagagacggGGATGGAGAAAGAGTGGATGGAGGAGGAGAGAGGTGCCCGTGGTGTTGGAGGAAGCTCATCAGACAGAGCCCTTCTCCATCTGTCACAAATCATTTCTGCTCGGCAACGAGCTTAGCATCAGCCGAGTGCTCTGTGATGGGCGGCGAGAGGATAGTGTCACGGCGGCTCTTCTTCATGACAGCTGATGGAGGGAGAGCTGGATTTCTGTTGCTGCTGTTGTCTTGTTCCTCTGCGGCAGTGAAGAGAGGGATTAAATGGACTGAGGTTTGTATTTGGTTTTCCCTCGAGGATCCGCAGTCTTTGCTTCTCCTCCCCTCCGCCTCTCCTTCAAGGAATATGGCCAGATTCATTATTTAGCTGTGCTCTTTTTGACAGCTGGGTCGGATGGAGGATAGggctttggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcgcgtgcgcctgtgcatgtgtgtgtgttactgaggCCTGACAGAAGACAGGAGGCCTGTCGGTGGAGGCTGCAGGAGCTGACAGCTGATCACACTGTCAGTCAAGCTGGAGGCTAACAGACTCAACACCGGCAACCTTCTTCCTGTCAGTTCTTCCAAAGGCCTCTTTTTAACACTCTTTCTTCATAAATGATCCACTGCCTCAAGGTTTCCTCCTGTatttctgtttcatttttttatcacTGACTGACTGGATTGCCCTGTTAAGATTACTGTAGATgaatataactgtatatatgttagTTCATAAACTTTCTTCTATTTTCTTTCTAAAATTCACTGCctcttaatttgtcatttaatttaatacgattttattttataatgtcctATTCACTGTATTGTCCTTTACTTAGATCACTTAAAAAAAGATATGTGTTGTTTACaaacctgatttttattttatttgaatcacTGACTTCATTGTTCATTATACAGATTACCataataaaaagtataatttCCATATTCTTTTCCCTCtatttttatcatatatttttaatttgttttagacTTCTGGGTTGTTTGTATATACTCATTTTCCTTTAATCTGCTGTGTTCATTTATTATCTTtatgaaataactttttttataattttaatggattttattttgttatgtttaattcaattgtattatttatttattttata
>TCONS_00022186
TTTCACATGACGAGCAGACACTCGCATCGGATTACTTCAAGCTTCtgccttaaaagaaaaaaaaactaagttttTTAAATACTAATGAAAACAACAGTGAACCTCTAGTGAATACTTAAGCGGTCAACTTTGGATTCACCTGGGGCAGCCGAGAAAGAGACAGGCCACCACACATGacaggagagacagagagagggagagagagacggGGATGGAGAAAGAGTGGATGGAGGAGGAGAGAGGTGCCCGTGGTGTTGGAGGAAGCTCATCAGACAGAGCCCTTCTCCATCTGTCACAAATCATTTCTGCTCGGCAACGAGCTTAGCATCAGCCGAGTGCTCTGTGATGGGCGGCGAGAGGATAGTGTCACGGCGGCTCTTCTTCATGACAGCTGATGGAGGGAGAGCTGGATTTCTGTTGCTGCTGTTGTCTTGTTCCTCTGCGGCAGTGAAGAGAGGGATTAAATGGACTGAGGTTTGTATTTGGTTTTCCCTCGAGGATCCGCAGTCTTTGCTTCTCCTCCCCTCCGCCTCTCCTTCAAGGAATATGGCCAGATTCATTATTTAGCTGTGCTCTTTTTGACAGCTGGGTCGGATGGAGGATAGggctttggtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgcgcgtgcgcctgtgcatgtgtgtgtgttactgaggCCTGACAGAAGACAGGAGGCCTGTCGGTGGAGGCTGCAGGAGCTGACAGCTGATCACACTGTCAGTCAAGCTGGAGGCTAACAGACTCAACACCGGCAACCTTCTTCCTGTCAGTTCTTCCAAAGGCCTCTTTTTAACACTCTTTCTTCATAAATGATCCACTGCCTCAAGGTTTCCTCCTGTatttctgtttcatttttttatcacTGACTGACTGGATTGCCCTGTTAAGATTACTGTAGATgaatataactgtatatatgttagTTCATAAACTTTCTTCTATTTTCTTTCTAAAATTCACTGCctcttaatttgtcatttaatttaatacgattttattttataatgtcctATTCACTGTATTGTCCTTTACTTAGAT

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0097458 obsolete neuron part cellular_component
GO:0005391 sodium molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021814 False 1296 lncRNA 0.41 2 32587438 32597276
TCONS_00022186 True 1064 lncRNA 0.46 3 32587733 32627440

Neighbor

gene id symbol gene type direction distance location
XLOC_010841 fbxl4 coding downstream 4640 32566218 ~ 32582798 (-)
XLOC_010842 CR848729.1 coding downstream 13202 32574110 ~ 32574236 (-)
XLOC_010840 NA coding downstream 27655 32558055 ~ 32559783 (-)
XLOC_010839 NA coding downstream 197964 32387576 ~ 32389474 (-)
XLOC_010838 NA coding downstream 208762 32348773 ~ 32378676 (-)
XLOC_010844 faxcb coding upstream 2634 32630074 ~ 32649929 (-)
XLOC_010845 coq3 coding upstream 24910 32652350 ~ 32673028 (-)
XLOC_010846 usp45 coding upstream 49077 32676517 ~ 32727199 (-)
XLOC_010847 NA coding upstream 114902 32742342 ~ 32819765 (-)
XLOC_010848 MCHR2 coding upstream 192887 32820327 ~ 33001153 (-)
XLOC_010626 CR392024.2 misc downstream 11692263 20895112 ~ 20895175 (-)
XLOC_010831 CR854927.2 non-coding downstream 423643 32152199 ~ 32163795 (-)
XLOC_010852 BX537338.1 non-coding upstream 888326 33515766 ~ 33541958 (-)
XLOC_010853 NA non-coding upstream 933423 33560863 ~ 33592580 (-)
XLOC_010855 NA non-coding upstream 1107888 33735328 ~ 33736759 (-)
XLOC_010856 BX530064.1 non-coding upstream 1122627 33750067 ~ 33758285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G143110 NA non-coding CI01000027 null 9682526 ~ 9682767 (+)