G299571


Basic Information

Item Value
gene id G299571
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1893007 ~ 1893710 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340105
ATAATTTTGTGACCATTTAGCAAAATAACTCATGCTGTGTACACACTAAAAGATTTTTAAAATGTGAGAGGCCACAAACATGAGGACAAAAAATCCTAGATTTAATCATTTCACTCCTATAGTGTGTGGTGTGCCATGATGTGACAAAGACAGCACACCACACACGAACAGCTTTTCAGCCAGAATCCTGACTGTGAACTTGGGAAATCTGGCAGAATCTCTCGAGACTTCAGAATGAACATGGCGGACGATAGACAGGAAGAAATTGCGGTTATGGTGCTTGAAATGATTTTGGTATGTTTTACAGGACACGTTGTATAAACACTCGTGCTGTTGCCACAAATCGACAACCTGATCCTCCATTTCTGCTGTCCAAATCCATTTAACTTTGCGCTGCACCATGACTGCGTTTGTTATGCTTCTGTCTTCTGTCAGCTCACTTTCTGATTGGATATTGTTTTGTTTCACGTGATAATTTCCAGAGCGTGCGCACGTTTGTCCTCAGGGTTCCCCCCGCACATCAGGATTTCTGATCGCGATCGAGGCAGCTCCGACGCTCTTCTGAGCAGATTCAGTCACTATTAACACACTTTACACCACAGGAAAATCTATAAAATAATCTGTAGAACCATCAAGATAATCAGGACATTACCTAGGATTGCTGGAAGGGGAGAAATTGGCCCAAAATCAGCCTGATTATCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340105 True 704 lncRNA 0.42 1 1893007 1893710

Neighbor

gene id symbol gene type direction distance location
CI01000086_01670242_01672517 NA coding downstream 218511 1669788 ~ 1674496 (-)
CI01000086_01313364_01320865 NA coding downstream 570993 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 594948 1295830 ~ 1298059 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 632982 1257926 ~ 1260025 (-)
CI01000086_01237966_01253245 NA coding downstream 639719 1237911 ~ 1253288 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 21303 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 54297 1948007 ~ 1983560 (-)
CI01000086_01994840_02008387 TPPP coding upstream 100885 1994595 ~ 2008387 (-)
CI01000086_02018950_02030464 NA coding upstream 125110 2018820 ~ 2030525 (-)
CI01000086_02032793_02044182 BRD9 coding upstream 139002 2032712 ~ 2044182 (-)
G299478 NA non-coding downstream 51737 1806086 ~ 1841270 (-)
G299560 NA non-coding downstream 89115 1802861 ~ 1803892 (-)
G299529 NA non-coding downstream 198098 1668012 ~ 1694909 (-)
G299527 NA non-coding downstream 225411 1667350 ~ 1667596 (-)
G299522 NA non-coding downstream 239407 1653336 ~ 1653600 (-)
G299493 NA non-coding upstream 17968 1911678 ~ 1912740 (-)
G299489 NA non-coding upstream 32958 1926668 ~ 1975954 (-)
G299494 NA non-coding upstream 95316 1989026 ~ 2004100 (-)
G299581 NA non-coding upstream 118150 2011860 ~ 2076479 (-)
G299488 NA non-coding upstream 159597 2053307 ~ 2054269 (-)
G299528 NA other downstream 197830 1668206 ~ 1695177 (-)
G299107 NA other downstream 766209 1126738 ~ 1126798 (-)
G299173 NA other downstream 1125128 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 1296378 587765 ~ 596739 (-)
CI01000086_01852638_01897719 UBR5 other upstream 204 1852146 ~ 1897719 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 470621 2364331 ~ 2373059 (-)
G299598 NA other upstream 971972 2865682 ~ 2868103 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012301 NA non-coding NC_007128.7 CM002901.2 41314405 ~ 41316816 (-)