G299493


Basic Information

Item Value
gene id G299493
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1911678 ~ 1912740 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340009
AACTTTTGAATGGTAGTGTGTGTGTGTGTGTGAGATATAAACAATTTAAAATATAGTACAGATGGATACATAAGGACGTATCCTTGTTTCAGTCTGTCAGCTCTCAGTCTTGGGAGCCAAAGGCTGCAGGTTGCGACTGAAAGTGGTGATGTTGTTCAGATGGCAAACCTCCTCCTGCCACACTGGTGTTCTCTTGGCTGTTAGATGGCGGCGTGCGTGTTTTGCCAAGTGGTCGCTACGCACAAATCGACTGTGGCAAACGGGGCAAGCAAAGCGCTTCTCTCCCGTGTGTGTGCGGCGATGACGTGACAGTTCATCAGATCTGGCAAAGCGCTTTAAGCAGCCGTCCCAGCAGCACCTGAACGGCTTCTCACCTGGTTGGAGAAGAAGAAATATATGGTAAACCCAACTTTGAGTTTGTTACTTTATGTCCAATGTAAAATCTGCTTCCTGCAGAACCAGCTGAGAAGCACTGATCTAAATCATGAAAACTATATATATTTAATTAGACACTACTGTAAAGTGAATTTAAGCAGGTGCTGGAGAAACATCGTTCTCTCTACCTGTGTGTGTCCTCAGGTGTGCTTTCAGGTGGGAGCTTTTGAAGTATGTTTTCCCACAGTGCGGGTGAGTGCAGACATGGTTGCGAGTCCGCGATGGAGCGGCTTCAGACACAGGTCTGTTTGTGGATGAGTTGTGGACGGGAGCAGGAGCGATGGCCGTAAACTTCAAACCACATGAAGGTGTTTGTTTAGGGGGCAGAATTACCACGACTGAACCTTTGGCCATCACACCGGCCACAAAAACAACAGACGCTTGACAAACGTTTGTCGAACCAGCAAAGGATTGAGTGAGTGGAAGCGTCTGGAAAACTGATGGCATGCTTCCAGAAGAAGAATCGGACACCATTGCAGCAGGGGCTGATGGGGGATCAGATCTGAGAGGCTGAAGGTTTATTGCTGAGTCACTGGCGCTCTGACTCAGTGCATCTGATGTGTGGCGGATCACACTGATGGCTTGAGATCTGGTGACCCCTGACCCCTGGTGTTGGTCACAGTCGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU340009 True 1063 lncRNA 0.49 1 1911678 1912740

Neighbor

gene id symbol gene type direction distance location
CI01000086_01852638_01897719 UBR5 coding downstream 13959 1852146 ~ 1897719 (-)
CI01000086_01670242_01672517 NA coding downstream 237182 1669788 ~ 1674496 (-)
CI01000086_01313364_01320865 NA coding downstream 589664 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 613619 1295830 ~ 1298059 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 651653 1257926 ~ 1260025 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 2273 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 35267 1948007 ~ 1983560 (-)
CI01000086_01994840_02008387 TPPP coding upstream 81855 1994595 ~ 2008387 (-)
CI01000086_02018950_02030464 NA coding upstream 106080 2018820 ~ 2030525 (-)
CI01000086_02032793_02044182 BRD9 coding upstream 119972 2032712 ~ 2044182 (-)
G299571 NA non-coding downstream 17968 1893007 ~ 1893710 (-)
G299478 NA non-coding downstream 70408 1806086 ~ 1841270 (-)
G299560 NA non-coding downstream 107786 1802861 ~ 1803892 (-)
G299529 NA non-coding downstream 216769 1668012 ~ 1694909 (-)
G299527 NA non-coding downstream 244082 1667350 ~ 1667596 (-)
G299489 NA non-coding upstream 13928 1926668 ~ 1975954 (-)
G299494 NA non-coding upstream 76286 1989026 ~ 2004100 (-)
G299581 NA non-coding upstream 99120 2011860 ~ 2076479 (-)
G299488 NA non-coding upstream 140567 2053307 ~ 2054269 (-)
G299589 NA non-coding upstream 149478 2062218 ~ 2063338 (-)
G299528 NA other downstream 216501 1668206 ~ 1695177 (-)
G299107 NA other downstream 784880 1126738 ~ 1126798 (-)
G299173 NA other downstream 1143799 765617 ~ 767879 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 451591 2364331 ~ 2373059 (-)
G299598 NA other upstream 952942 2865682 ~ 2868103 (-)

Expression


Co-expression Network