G299488


Basic Information

Item Value
gene id G299488
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2053307 ~ 2054269 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340004
AATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTTAGAGACACATCCTGGGGACACCAGAGACTTATATTACATCTTGTGAAAAGCAGCATAATAGGTCCCCTTTAAATTAACCCTTTAATATTCGATATAGAACCTTTTCTTCTAAGAGTGAAAACATTTTAATTGTAAATCAAAAAAGAAAAAAAAAAAGAACCAAAAGGATTTTTTTTTTAATTTTAATCAAAGGATTTAAATATATACACATCACATATAAAAACCGAACATAAAAAAAGAACATTATTTTTTCATATGCAAATAGCAGCTGCTACAGTGCATATTATAAACTCAGATTTACGACACCAAAAACTTCAGCTTATGAATACTGAATTGAAAAATATCACCTAGAAGATGACAGTCCCATATAGATAAGTGCTGTTTCAAACTTGAAACACTGGTTTGTTCAGAGGATGAAGCTGGTGAACAGAGCGGAAATATTGAACTAACAAACAAAAAACCATTTCGATACAACGGCAGAACGTCAGTTAGCTTCAGCTCAAACACAGTTGACCAAACTCGCCTGTTCCTGTCTCTGTTTGTCCACGGCATGGCCCATCGCTTTTAGAAAACTCTCAACTGTCATTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU340004 True 627 lncRNA 0.34 2 2053307 2054269

Neighbor

gene id symbol gene type direction distance location
CI01000086_02032793_02044182 BRD9 coding downstream 9125 2032712 ~ 2044182 (-)
CI01000086_02018950_02030464 NA coding downstream 22782 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 44920 1994595 ~ 2008387 (-)
CI01000086_01948087_01983560 SPIRE1 coding downstream 69747 1948007 ~ 1983560 (-)
CI01000086_01915013_01921794 AZIN1A coding downstream 131513 1915013 ~ 1921794 (-)
CI01000086_02192695_02193522 NA coding upstream 138366 2192635 ~ 2193766 (-)
CI01000086_02366362_02373059 SLC6A20 coding upstream 311999 2364331 ~ 2373059 (-)
CI01000086_02400288_02400580 NA coding upstream 345589 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 348603 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 488099 2542368 ~ 2545808 (-)
G299494 NA non-coding downstream 49207 1989026 ~ 2004100 (-)
G299489 NA non-coding downstream 77353 1926668 ~ 1975954 (-)
G299493 NA non-coding downstream 140567 1911678 ~ 1912740 (-)
G299571 NA non-coding downstream 159597 1893007 ~ 1893710 (-)
G299478 NA non-coding downstream 212037 1806086 ~ 1841270 (-)
G299589 NA non-coding upstream 7949 2062218 ~ 2063338 (-)
G299625 NA non-coding upstream 34845 2089114 ~ 2089377 (-)
G299626 NA non-coding upstream 36141 2090410 ~ 2090661 (-)
G299650 NA non-coding upstream 85027 2139296 ~ 2139624 (-)
G299651 NA non-coding upstream 88616 2142885 ~ 2143145 (-)
CI01000086_01852638_01897719 UBR5 other downstream 149888 1852146 ~ 1897719 (-)
G299528 NA other downstream 358130 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 792070 1257926 ~ 1260025 (-)
G299107 NA other downstream 926509 1126738 ~ 1126798 (-)
G299173 NA other downstream 1285428 765617 ~ 767879 (-)
G299598 NA other upstream 811413 2865682 ~ 2868103 (-)

Expression


Co-expression Network