G298611


Basic Information

Item Value
gene id G298611
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2253116 ~ 2321680 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339011
GTTAACTAATCCTTTAAGATGTAACATAAAACCCTAATGTACATAACTGATAAGAAAAATCTAAAAAGAAACATAATGGCTAAATGAAAAACCATCAAATGTGAGCTGTCACACATTCTAATAAACCTGAGTTTGTATATTATGAATATTGTTGGTTCTGTGATGAATTGCTTTTGTTTTTCTTTTGTAAGTTGCTTTGGATAAAAGCGTCTGATAAATGAATGAATGTAAATGAATTCTGGGAACATCTCTGCTTTTTCACTGTAAATTATAAAGTGAAATGATTTTCGCTTCCAAAAACTGTACATTTATCAGTATTTTACTATAAAATTACATGAAATGTCCCATTTGATCTATTACAGTTTTTAAGGGAACTTATCGCTAACTAGTTTACAGGTTTTTACTGTTAAAATTATGATCATTTTTTACAGTACATTGGCTCGGGCTTCACTTTTTATAAGATTCAAGTTATAAATAAAAACTTTAGGGTTCAAGTATGTAGTTTTTTTTTTTTTTTTTTTCATTTTTAGAAATCAAATCGAATGTGTATGGGAAAGTAATTTGAGAGTTTTTTTTAGTTCTTCTGAAGGAGCTTGGGAAAACATTTGTGGTGAACGGAGGAGTATTTTAGTCTCTCGTGCTGGTTATACTAGAGATCTGTTCCAAAACCTAGTGAGCTGCTTACGTAGACTTCATAGATGCGCTCTAAAGAAGAGAAGGCAATTCCATAATGCATTGCAACGATCATCTTACTAGGTTTTGGAGCTTATGTTTTCATTCTCCTCCACTCTTTTTTTGAAAAGGTGGTTCCTGCATGTGATCCATTTTCCTTGTTGCATTGCATTTAAGAGAGAGAGAGAGGTTTTGGGAGACGTAACCCTTACCTGACCTCAGCTGTAAATCCACAAGCTTTACTGAAGTTTACACAACAGATCTATTGCGACATTCAGGCTTAAATCTCTGTGCATTGAGTCCATTCACATGTTCATCAGTCAGGAAATACCGCTGAACAACTCGATGAACACGAGTGTAAATGCAAGGAGACAGTAAAGACCTCCATTAATCGAGTCATTAACGAGGTTTGAAGGGGAAAGAAATGACCTATAAATAAGGTCAGTGTCACGTAATGTGGAATGTGCTGGGAAAAGTTCAGGGTACCTGCCAGTTTTAATAGAGTATTTCCTTCTTTTTTTTCTTCCTTTTTTGTCTTGAACAAAGAACTGAACACTATAAAAAAAAAATATGACATTCTCATTCTTTTATAAATATTATGCATGCAGATTTTATGACTTCACATTAATTGAGTAACTACTTGGAATATTTGGAATTTTAAAAATTAATTTATCACACTCTAGGAACATTAAAAAAAGAGCACCCATCATGCATTGCCATTGTAGGATTGTTGTTTGGTGGCTGTATTTATGATGTCGTTGGTGGTGTTTTTGTCACTGTTTTGTGTGGTGATGTTTGAAGCTCATCTTCATTTTATGATGTTTGTTGATTTTCGCTATTATTGAGAAGTGTTGCATTCTGCATGCATCTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGCTGGCCGCTGTCCTGAAACTAAGTGTGTGTCCCATTTAATGACAGCTGTGCACAAAAATCACTTTCAAGCATATATTAAGTAAATATTTATTTGCTTATTTTTTGCATTGTGACATTTGCGTTTTTAGTTCCTCAAAAAATATTTATTTATTTGTTTGTTTGTTATTTTCAAACATCGTAGTATTTTATGGAAGCTTGTTTCCAACAATGAATAAAAACCGAAAAAAGATAATTGCTACTTTTTATCTCACAATTCAGACTTTTTTTCTCGCAAGTTTTTTTTCTCGCAAGTCTAGAAACTCAGAATTGAGAGAAATAAATTAATAAATAACTCAAATAAATTCCACGGAATAAAAAAATAAAAACGTAATTGTGACTTGCAATTACAAATTTATATCTTACGATTCTGAGAAAAAGTCAGAATTGTGAGATTAAAAGTCACAGTTACCTTATTTATTTTTTTATTCTGTGGAGGAAACAAGCTACCATAGTATTTTCTGTGCTGCCATTAATTGATAATGATTTAAATTAGGGCTGCATCGCATTCGCATTAGTCACATAGCAAGATATGCAATGTCAAGTCAAGTAGCCTATAGGGATTGTGGTTGATCAGTTCCGGTTCAGAACGCATGTGATTTGCGGATTAATTGCAAAGTTTAAACATAATAGAGTGAAAGTTTATCATTTGCATGTGTTTTTAAAGGATTAGTTCACTTTAAAATGAAAATTAGCCCAAGTTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTATTCTTTCTGATGAACACAATCTGAGTTATATTAATAAATATCCTGATGTATCTGAGCTTTATAATGGCAGTGAACGGGACCAACGAGCTTGAAACTGAAGAAAGTGCCTCCATCCACATCCATCCATTATAAACATACTCCACACGGCTCCGGGGGGTTAATAAGGGCCTTCTGAAGTGAAGCGATGCGTTTGTGTAAGAAAAATATTCATATTTAACAAGTTATATAGTAAAATATCGAGCTACCGCCTTCCGTATTCAACTTAGGAAGAAAGTGTAAGGACTCTCACAGTTCAAAATGCTTACACTACGTCCTACGCCTTCCGTATTCAAATTAGGTAAAAAAGCATCACGTCACGTCAACGTTGAATACGGAAGGCAGTCTGGCGAAAGCTAGATATTTTACTTGAGTCAGGATATTTATTAATATAACTCTGATTGTGTTCATCAGAAAGAAGAAAGTCATATACACCTAGGATGGTTTGAGGGTGAGTAAAGCTTGGGGTAATTTTCATTTTAAAGTGAACTAATCCTTTGTGTCAGTTTAAAAATCAAGCGCAAGAAGACTGGAACTCACAAGCTGTTTTCTGTGCGCGCACACAGAGCCGCTCAGACAGCACAAGAACACCAAATTCAGGTCTCTTTCTCTTCTTTTTGAGCTTGAATGGACACGTGCACACAAAATTAAGTCAAAATGCCCGTCTTGGTGAGTATCCTTGTAAACAATTGAGAAAGAAAAGGGATGCGTATCATTATATTGGATCCTTGCATTCATCTTAAAGTGACAGCAGCCTAATAAACCCGCAGCTGTTTGTGTCACCAATGTTAATCAAACCACAAAAGAGAAGAAAATCACTTTTGTAGCTTTAACAAAGATAAATTGTATTAATTGAATTATATTAATTATATTTAATTTATACAGTGCTATGCATTGTTAGTTTACATTTGATTATTCAATGTGTGTACCTGAGTACAGTTAGATTTACCTGAAAAACATAAAGCACTGTTTATTATTTCATTTGTATCTTTGTTCTATTATATTTAGATGCACTACCCAAAAAACTCCCCCATATCATCCTAAAATGATTAATTCTTTACAAATATTCAAATCGTCTGGTGAAATTATTTTTATATCGCAATATATATCACAGAACACAAAATATTGCAATGTCATTTTTTTCCAAAATCATGCAGCCATAATTTAAATAAAAATACTTTTATTTAAAATTACTTTTAAAATATATTGTATAGTATTGCAGTAACAAGAATCATTAAGAAAGATGTCAAGATGCTTTAAAGGGTTAGTTCACCCAAAAATGAAAATAATGTCATTTATTACTTATTAGGTGAGTAATAAATTACATTATTTTCATTTCTGGGTGAACTAACCCTTTAATGCATAATTATCTTGAAAATAAGGTCACTGTTGTAAAACACAACTTTTTCTTTATGTAAAATAAGTCATTTTTAATGTTTTGATTTTCTTTTTAAATTAGGGTGAAATATGTTTTATCTGTATACTTCATGTCACTTCAAAAGCAACTTTTTTGCCGCTTCTGCAGTGTAAAGATGCTGAATGCACAGTTCAAAGGGATAGTTCACCCAAAAAATGAAAATTGTCATCATTTACTCACCCTCAAGTTTTTACAAACCTGTATGAATTTCTTTCTTCTGCTGAACATAAAAGATATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU339011 True 4053 lncRNA 0.32 2 2253116 2321680

Neighbor

gene id symbol gene type direction distance location
CI01000086_02226264_02227472 NA coding upstream 25491 2225543 ~ 2227625 (+)
CI01000086_02203506_02218668 PTDSS1B, PTDSS1, PTDSS1A coding upstream 34431 2203023 ~ 2218685 (+)
CI01000086_02152113_02180258 PLEKHG4B coding upstream 72858 2152113 ~ 2180258 (+)
CI01000086_02104570_02112682 NA coding upstream 140308 2104570 ~ 2112808 (+)
CI01000086_02067516_02068077 NA coding upstream 182931 2066163 ~ 2070185 (+)
CI01000086_02335074_02346679 SACM1L.L, SACM1LB, SACM1L, SACM1LA coding downstream 13394 2335074 ~ 2346920 (+)
CI01000086_02381193_02384764 NA coding downstream 59513 2381193 ~ 2385128 (+)
CI01000086_02387094_02397102 NOD1 coding downstream 65414 2387094 ~ 2397145 (+)
CI01000086_02741241_02763692 XRCC1 coding downstream 418976 2740656 ~ 2764358 (+)
CI01000086_02773589_02785090 DRD2L coding downstream 451909 2773589 ~ 2785122 (+)
G298656 NA non-coding upstream 138947 2113883 ~ 2114169 (+)
G298601 NA non-coding upstream 188815 2062216 ~ 2064301 (+)
G298642 NA non-coding upstream 233799 2018553 ~ 2019317 (+)
G298602 NA non-coding upstream 269470 1965053 ~ 1983646 (+)
G298574 NA non-coding upstream 313806 1937608 ~ 1939310 (+)
G298577 NA non-coding downstream 1216 2322896 ~ 2325725 (+)
G298596 NA non-coding downstream 8899 2330579 ~ 2331759 (+)
G298676 NA non-coding downstream 93702 2415382 ~ 2417816 (+)
G298694 NA non-coding downstream 135643 2457323 ~ 2457531 (+)
G298706 NA non-coding downstream 225036 2546716 ~ 2549968 (+)
G298529 NA other upstream 371663 1876890 ~ 1881453 (+)
G298381 NA other upstream 1076200 1172156 ~ 1176916 (+)
CI01000086_01150842_01165271 DHDDS other upstream 1087194 1150842 ~ 1165922 (+)
G298366 NA other upstream 1105249 1136660 ~ 1147867 (+)
G298208 NA other upstream 1273006 947191 ~ 980110 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 other downstream 485903 2806368 ~ 2845762 (+)

Expression


Co-expression Network