G299672


Basic Information

Item Value
gene id G299672
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2255439 ~ 2269317 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340223
CCAGGACTTTATGTTCCCTGACCTTCAGAGACTGTCTGCTCCCTTTGGGATCCAGCAGGTCTCTGACTTTTTCATTGTAGATCTCCATGAACGAGACCTCCACCTTGAAGGAATGGGCCTCGTTCTGCTCTTTGGAGACCCTCTCGAACAGCGAGCAGCAGAGTCTCGGGATCAGTCCTGGCTGCTCTCCGTTGCCCATCATTGAGAAGGATTTCCCAGAGCCTGTTTGTCCATAGGCAAAAATGCAGGCGTTGTATCCTTGAAATGCGTTTTCAAGTATTCCCTCCCCAAGGCACTTGAACACGACCTCCTGACCGGCGTACTTCGGGATGTTGGACTCATCCATGGACCAGAAGCAGTGGTCGAAGGCAAACACCTTTGGCTGTTTTCTG
>TU340226
GGGGAAATTTCTTATTGTGTGAAATATGTTTGTGTACTATAGTTATGTCTCGCAGGGCTCTTTCAGGGTAATTACCACTGCTCTCATGCCAATGAATGAGCATCTATTCAATGAAACGGATGTCACTATCAACAAAAAGCACCCTTACAAAAGACCATATATTGTTTCCTGAAGGCTTCTCTCTGTAACAGTACCTGTTTGTCCATAGGCAAAAATGCAGGCGTTGTATCCTTGAAATGCGTTTTCAAGTATTCCCTCCCCAAGGCACTTGAACACGACCTCCTGACCGGCGTACTTCGGGATGTTGGACTCATCCATGGACCAGAAGCAGTGGTCGAAGGCAAACACCTTTGGCTGTTTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340223 False 392 lncRNA 0.52 5 2255439 2269317
TU340226 True 364 lncRNA 0.44 3 2255439 2267081

Neighbor

gene id symbol gene type direction distance location
CI01000086_02192695_02193522 NA coding downstream 61673 2192635 ~ 2193766 (-)
CI01000086_02032793_02044182 BRD9 coding downstream 211257 2032712 ~ 2044182 (-)
CI01000086_02018950_02030464 NA coding downstream 224914 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 247052 1994595 ~ 2008387 (-)
CI01000086_01948087_01983560 SPIRE1 coding downstream 271879 1948007 ~ 1983560 (-)
CI01000086_02366362_02373059 SLC6A20 coding upstream 96951 2364331 ~ 2373059 (-)
CI01000086_02400288_02400580 NA coding upstream 130541 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 133555 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 273051 2542368 ~ 2545808 (-)
CI01000086_02610598_02642920 CDK14 coding upstream 341250 2610567 ~ 2642920 (-)
G299667 NA non-coding downstream 54363 2200866 ~ 2201076 (-)
G299666 NA non-coding downstream 54585 2200642 ~ 2200854 (-)
G299651 NA non-coding downstream 112294 2142885 ~ 2143145 (-)
G299650 NA non-coding downstream 115815 2139296 ~ 2139624 (-)
G299626 NA non-coding downstream 164778 2090410 ~ 2090661 (-)
G299699 NA non-coding upstream 9912 2279229 ~ 2286071 (-)
G299711 NA non-coding upstream 52509 2321826 ~ 2322795 (-)
G299716 NA non-coding upstream 63597 2332914 ~ 2333150 (-)
G299717 NA non-coding upstream 63958 2333275 ~ 2333540 (-)
G299718 NA non-coding upstream 64692 2334009 ~ 2334242 (-)
CI01000086_01852638_01897719 UBR5 other downstream 352020 1852146 ~ 1897719 (-)
G299528 NA other downstream 560262 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 994202 1257926 ~ 1260025 (-)
G299107 NA other downstream 1128641 1126738 ~ 1126798 (-)
G299173 NA other downstream 1487560 765617 ~ 767879 (-)
G299598 NA other upstream 596365 2865682 ~ 2868103 (-)

Expression


Co-expression Network