G299711


Basic Information

Item Value
gene id G299711
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2321826 ~ 2322795 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340266
AAAACGGCATGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCAGACACATTCTGAGGACACCAGAGACTTATATTACATCTTGTGAAAAGGGGCATTATAGGTCACCTTCAGACATCACTTTTGCCCACTACTGTATACAGTACGTTAAGTTTATTTTCTAAAAGTCTACAGGACAAACGTGCCCATAGTTTTAGATTTATGAATGTTTTACACAGATTCGTTCTGCTTGTACTTCATGAATGAGGCTTAATTGGTGAATCACAACTCACAAAATGAATGTCATTAGATAGTGCTGCCACTAACAAGAGTCCATCTGAGCTCCGAGAGTCACTGAGCTGACCATTTTAGTTCTTGATGATGATTCAAATGAATGCTTTTGTATTATTGATATCATGGCAAACCTATTTCATTTGCAAACTCAGCATTCAATCATGAGTTCATGTCCTAATATTGCTTAACCCCCCACTCCAAATGCCAGGGTAAAAATAACTATGGGTATCAAAGCAGATTGATCAACATCACAGCAGAAAAAAAAAAAAAAAAAAACTTTCCAAAAAAAGAATAGAGCGACACCAATTCTGCAATCATAATCATAAACAGGGTCAATGTTACTGTCACACCAAACACTTTTTAAAAGAAAGAAGAGAAATCCAGTTAACTCACACACGCACACGAAAGAAAAAAAAAACACTCGCGTGCGTTCACACGTCACCGCGTCCACTGCACACAAACACAACATTTGAAGAGTGGAAATCTGCTGCTAAACACACTGAGAGAGACCAAAACTAACACATACTACTTCTGTTTGCTGCTGTGCTGATGGGAAAATAAGCAGCAAGCACTTAAAGGGATAGTTCACCCAAAAATAAAAATTGTGTCATCATTTACTCACTCTCAAGTTGTTCCAAACTTGTATGAGTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU340266 True 970 lncRNA 0.37 1 2321826 2322795

Neighbor

gene id symbol gene type direction distance location
CI01000086_02192695_02193522 NA coding downstream 128060 2192635 ~ 2193766 (-)
CI01000086_02032793_02044182 BRD9 coding downstream 277644 2032712 ~ 2044182 (-)
CI01000086_02018950_02030464 NA coding downstream 291301 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 313439 1994595 ~ 2008387 (-)
CI01000086_01948087_01983560 SPIRE1 coding downstream 338266 1948007 ~ 1983560 (-)
CI01000086_02366362_02373059 SLC6A20 coding upstream 43473 2364331 ~ 2373059 (-)
CI01000086_02400288_02400580 NA coding upstream 77063 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 80077 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 219573 2542368 ~ 2545808 (-)
CI01000086_02610598_02642920 CDK14 coding upstream 287772 2610567 ~ 2642920 (-)
G299699 NA non-coding downstream 35755 2279229 ~ 2286071 (-)
G299672 NA non-coding downstream 52509 2255439 ~ 2269317 (-)
G299670 NA non-coding downstream 62494 2226190 ~ 2259332 (-)
G299667 NA non-coding downstream 120750 2200866 ~ 2201076 (-)
G299666 NA non-coding downstream 120972 2200642 ~ 2200854 (-)
G299716 NA non-coding upstream 10119 2332914 ~ 2333150 (-)
G299717 NA non-coding upstream 10480 2333275 ~ 2333540 (-)
G299718 NA non-coding upstream 11214 2334009 ~ 2334242 (-)
G299616 NA non-coding upstream 23507 2346302 ~ 2351283 (-)
G299606 NA non-coding upstream 58240 2381035 ~ 2385164 (-)
CI01000086_01852638_01897719 UBR5 other downstream 418407 1852146 ~ 1897719 (-)
G299528 NA other downstream 626649 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1060589 1257926 ~ 1260025 (-)
G299107 NA other downstream 1195028 1126738 ~ 1126798 (-)
G299173 NA other downstream 1553947 765617 ~ 767879 (-)
G299598 NA other upstream 542887 2865682 ~ 2868103 (-)

Expression


Co-expression Network