G299616


Basic Information

Item Value
gene id G299616
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2346302 ~ 2351283 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340163
CTTTAATACCTTTCTGGGCCTTGAAAGTGGTAATAACGTTGCAGTCTATCAGAGGCCAGAAATCTCACAGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAAGTCTTACGGGTGTGGAATGACATGAGGGTGAGTAATTAATGACAGAAATTTCATTTTGGGGTGAACTAACCCTTTAAATTCAGTCTGTTTCTCACACACATCATCGTATGACTTCAAAAGACTTGGACTCATGAATCATATTAATGATTTATAAAATGATCATTTTTGCAGATTGACAGAAATGTTCACAATGAATTATCGCTATGAAAACAGCAAAAACAGCATGAATGTACTGAACGTCTCATTTGTGTTATGCAAGTTTGGAACGACTTGACAGAGTTGATCATTTGCAGATGAACTTTTTCAATGCAGTAAGATTGAAGTTGACTGGCCATGGAGTTCATGTGGAGAAAATGCTGTTAATTGGACGAACCCCTGCAGACATGCACACGGGTCACGGTTTGCAGTCTTGTTTCGGCTGATCTGCTGTGGCATTTTGAGCCTGTTATTCCCATTCAATTTGAGCTCGTTCAAAGCAACGCACTTTTTGAAATTCCTACCAGGAATGTCATGCAAACATGTTCCAGTCAATGCAGATAAAACTAGTGTGAGTGACATGAAGCGAGCAAACTGAACACAGTCCTCAACAGATCTTCAACAGTTTGTAATTTTGTAATGCATTTTTTGCAACATCCGTCAGTGCTGAAGCTTTCCAAGGACAGCTTGTGCTCGGGACGCTCTTTTCCCTTTAGAACCGAAACTTCCCGACACAAGAGCATCATGATAATAACTTTAATAACAATAATACACATCATTTTAACATTCTCCGATAAGCAGGTGCCAGACATGAGAAGAACGTCCTGCAGTGAAGATACAGAGGGATCAAATGAAGAGCACAGCAAACATAAGGCATCAATCCTCCGCAGACTCATGAAAGAAACACAGATATGGCACAGCGGTTCAGTGATGGGACGATCCTGCTGTAAACTCCTTTGGCCAATGAGACGCTGGTCCCAAGTAAAGATTCATATGAATCAGTTTTGATTACGAACAGAATCAGTTCATTAAGCTCCACAGAATGCCTCGAATCACTTTAATAAACAGTTCATTTGTAAAGGCTCCCAAAACTCTGACTGAGGAAGACCATGATATTGAAGGCGAGGATAAAACGAGTCCTTTTAACCGCACATGAACTCTGGGTCCGTCTCAAATGCTCGAATTCACTACAAAATGCTGAGACATGCAGCTGCCGCAATGCAAATCGCTATGTTTGTCTTGTTTTCCAGTAAAAAAAAAATGAAATTAAATAAATAAATTTAAGCACTCTCAAGAACAAAAAATTTAAATAACGTGTAATGCAGAATTAAATATATAATTGAAGATATTAAGATGTTTTTAAAAAATTACATTGATTTTTGTAATGTTTTTTTCTCGCTTCAAACATTTTCTTACGGAAGCTCGTTTCCGCCACTGAATAAAAAATAAAAAAGGTAATTTCGACTTTTTTTCTCACAATTGCTAATTTACATTCTGCAATTCTGAGAAAAAAAAGTCAATTGCGAGTTTATATCTCACAATTCTGACTTTATAACTCGCAATTGTGACTTTAAAACTCACAATTCTGAGAAAAAAGTCAAAATTGTGAGTTTATATCTTGCAATACTGACTTTATGTAACAAATTTCTGACTTTATAACTCACAATTGCGACTTTATATCGCAATTCTGAGGAAAAAGTCAAAATTGTGAGTTTATATCTTGCAAATCTGACTTTATAACACAATTCTGACTTTAAAACTCGCAATTCTGACTTTATAACTCACAATTGCGACTTTATATCGCAATTCTGAGAAAAAAGTAAAAATTTAGTTTATATCTCGCAATTCTGACTTTACATAACAATTCNGACTTTATATCACGCAATTCTGACTTTAAAACTTGCAATTGTGACTATATCTCACAATTCTGAGAAAAAAGTCAAAATTACGAGTTTATAATTCAGAGAAAAAAAGTCGGAATTGCGAGATAAAAAGTCGCAATTGTCTTTTTTTTTTATTCTGTGGCGGAAACAAGCTATCATATTTTCTTACTTAAAACAAGAAAAAACTATTACAATTTAAATAAATCATTTAGAGAAAGATATATTTGCCGAGATCAAAGCTTACAACAAGTTTCAGTTTGTTTACATCAAAGTTTCATCAACTAAAAATTAACATTTTTACAGGTTGAAAATAATAGAATAAATGTTAATTCATGTTGTTCATTCATAATATATCAGTTAACTTTAAAAATGCATATGTATATTAAAATGTATATGCAGAAATAATAAATGCTGTAAATGTATTGTTCATCATTTGTTCATGCTAGCTATGGCATTAGCCAATGCTAACATACAGAACCTTATTGTATTACAGAACATTAATTTGTTTACATTAGTTAACATGAACTAAGTGAACAATATATTTTTGAAGTATTTATTATCTTAGTTGATGTTATTCTGTAAAAATATAGTTGTTCATTGTTTGTTCATGTTAGTTCACAGTGCATTAACTATAATGTTAACATATACAACTTTTGATTTTAATAATGTATTAGTAAATGTTGAAATTAACATTGACCAAGATTGATAAAATCTAATCATTGTTAGTTCATGTTAACTAATGTAGTTAAACCTTATTGTAAAGTGATATCAATATATCTTATTGTGTACATATCTTTATTAGAAAACAAGACAATGATTTTGAGGTGACGGCAGATGCGATACAAATGCGTTTGGTTTTACACAAACAGTCCGAGAGCTGCGACTTATGAGAGCCGGTGGGATATCGGCAGGCGTGTGCGTTTAGACACGGGTGTCTATGAAAAACGCCTTCGGGACGTGTGAACCACGAGGACGGGGCCGAGAACCTCATGGTCGAGTATAAGGTGCTTGATTTTCCAGCGTTGCTCCTGTAAAGCTGCCTATATGCAGATGGAATTATGGGATCTCTGTGAGATGGTCCCGCGTGATACGATTCCCGTGTGGAGAGCAGCGGGTGCGTCCATGCGCGTTCGGTCCCGTCCGGCCCCCGGCCTTCGTCCTCTTCCTCCTCGCCGTGTGGCGTCAGTACAGGCTCCAGGCCCGGTGAAGCTGAGAGTAAGACAGGACTGAGGATGAGGAGGAGGAGGAGGATGAAGACTCGGTGGGACCAAGCTGCTTCCCACACACGCAGGTTCAGTCCATCTTCTCCTTCTGTACCAGTTTGGGCGCGTCGACGAAGTCCCGGCCGTTGAAGAGGATCACGCCGCCGGTCACAACACTCGCCGAGCCCCAGAACAACACGTACGCCAGAGTCTCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU340163 True 3392 lncRNA 0.37 2 2346302 2351283

Neighbor

gene id symbol gene type direction distance location
CI01000086_02192695_02193522 NA coding downstream 152536 2192635 ~ 2193766 (-)
CI01000086_02032793_02044182 BRD9 coding downstream 302120 2032712 ~ 2044182 (-)
CI01000086_02018950_02030464 NA coding downstream 315777 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 337915 1994595 ~ 2008387 (-)
CI01000086_01948087_01983560 SPIRE1 coding downstream 362742 1948007 ~ 1983560 (-)
CI01000086_02366362_02373059 SLC6A20 coding upstream 14985 2364331 ~ 2373059 (-)
CI01000086_02400288_02400580 NA coding upstream 48575 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 51589 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 191085 2542368 ~ 2545808 (-)
CI01000086_02610598_02642920 CDK14 coding upstream 259284 2610567 ~ 2642920 (-)
G299718 NA non-coding downstream 12060 2334009 ~ 2334242 (-)
G299717 NA non-coding downstream 12762 2333275 ~ 2333540 (-)
G299716 NA non-coding downstream 13152 2332914 ~ 2333150 (-)
G299711 NA non-coding downstream 23507 2321826 ~ 2322795 (-)
G299699 NA non-coding downstream 60231 2279229 ~ 2286071 (-)
G299606 NA non-coding upstream 29752 2381035 ~ 2385164 (-)
G299734 NA non-coding upstream 105844 2457127 ~ 2457340 (-)
G299739 NA non-coding upstream 112218 2463501 ~ 2463712 (-)
G299765 NA non-coding upstream 149849 2501132 ~ 2501412 (-)
G299766 NA non-coding upstream 150145 2501428 ~ 2501664 (-)
CI01000086_01852638_01897719 UBR5 other downstream 442883 1852146 ~ 1897719 (-)
G299528 NA other downstream 651125 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1085065 1257926 ~ 1260025 (-)
G299107 NA other downstream 1219504 1126738 ~ 1126798 (-)
G299173 NA other downstream 1578423 765617 ~ 767879 (-)
G299598 NA other upstream 514399 2865682 ~ 2868103 (-)

Expression


Co-expression Network