G299606


Basic Information

Item Value
gene id G299606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2381035 ~ 2385164 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU340153
TTAATGCTGGAAAGAAAATACTTTATGGAATTTTATTGTTTTACTACCAATCAATACGAATACTGCACATTTTTCTTGTTCTGCATAAACAACATAACTAACCTAAGGGCGAATCTTCAGATAGAATCTCTTGTGTGCTTTCTTTGGATTTCAAAGCTTTCTCCAGTTCTTCCATCACAGGTAGATGTCCCTCGTATTTGTTGGTTTCGATAGACCTGAGTTTATCCTGGTAGTCTTCCGGCAGCCCGTTCTGCTCCGCGCCCATTACAATAACCTGCAAATATTTGATCAAAAATACAGTAAAAACAGTAATATTGTGATATATTAGTACTATTTGAAAGAACTAAATGTAATTTATTCCTGTGATGCAATTCTTACATGTTTTACAGTATAAATTGTGTTATGTGCATGTGACAAGAACCATGTTTCCACGAAGAGGCTGTAATTGCTCAGGACAGCAGAGATTCATTCAAAAAGCCATAACAAGCACATGTTCTGGTTGCCTAATTAGTCTACTAAAAGTGACATGTCCAATGGATAAATATAGAAGTATTATTTTGTGGCAGAGACACTTGTATGAAAATTATAGTACATATTCCAGATGCTTCAGTTTAATGTGTTTTGTTGTGAAGGGCTGTCTGACCCAGTTGCTGGCGGTGCTTTATTGTCTTATACTGCACAAAGCAAGCTGGGGTAAATGCCAGAAAAACACCACAACATTGTCCTTTTGCCAGCAGCACAAATAACAAACTCATTCTGTTTTGAAAAATGATATCAGATTACTCTGTTTAGAGAAGCACGTTTCTTGTTTTAATTGCTTCGACATACAATAGATGCAGGGAAAACAGAATCAGCTTAATTGATTTATTATTTAAATCTTCTCTTAATTCAGACATTTTCGGATCTTTCAATGATTCAGTTGATCTTATAGATAGAACGATAGAACTATAGATAGATAGATTTTAATGCTTGTTTTGTCTTATTTTATAGTCATCTTGAGGCCTGCGTGGAAGTTTTCTGAGGCCCCCTAGTGGACCCCAGACCCCTGGTTGAAAACCACTGAGCTAAACTAAAGTCCTGATAAAAGCCTCATGTTGTGACTTATTACAGGAAGCAGGAGACTGTACCTGTAGATACTGTGGTGAAGGTGGCGCATACACACAGCTGTTCATGATGTATGTCCGACAGTTGAGATCCTGGTCACTGGTGGAAACGGACACCTCCATTGGGCTGTAAGTCCCCATTTTCACATTCTCCTGCCTGCAGAAGAACATATGAGGACCTCCAACATTCACTTACTACTGCTAATTAGGTATTCATTTGTTTTTATAAGTGTGGGTTGTGGGTCTGAAGGCTCCTACCTGTCCAAGGACTCAAGGTCCGACATGTTCATCCTCCACACGACCCCCCACACCTCATCACCTGGGCTGTGCTCGATGGTCGCAACACCACCACGCCAGCGCTGACTCGCTAACCCTTTGTGGTTGCCAAAGACCAGTTTATAGTCCTAGAGAAGTTGACGAGTTAGTAATGGATGGATGGATAGATAAAAGAAAGGGTAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGCTAGACAGATAGCTAGACAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAGCATATATAGATAAAAGGGTAGATAGAAAAAAGGATAGATAGATAGATAGATAGATAGATAAAAAGGGTAGGTACATAAATAAAAAGGGTAGGTAGATAGAAGTTGACAAGTTAATGGATGGATGGATAGATAAAAGAAAGGGTAGACAGACAGACAGATAGATGATAGATAAAAGTGTAGATAAGATAAAAGGGCAGATAGATAAAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAAGGGTAGGTAGATAGTTAGAAGTTGACGAGTTAGTAAGGGATGGATGGATAGATAAAAGAAAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAAGTTGACGAGTTAGTAAGGGATGGATGATAGATAAAAGAAAGGGTAGATAGATAGATAGATACATAGATAGAAAGGGTAGGTAGATAAATAAAAAGGGTAGATAGATAGATAGATAGATAGATAGATAGAAGGATAGATAGATATATAAAAAGGGTAGGTAGATATATAAAAAAGGATAGATAGATAGATAGATAAAAAAGGGTAGGTAGATAGATAAAAAAGGATAGAATAAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAAGGGTAGGTAGATAAATAAAAAGAGTACGTAGTTAGAAGTTGGCGAGTTAGTAAGGGATGGATGGATAGATAAAAGAAAGGATAGATAGATAGATAGATAGATATATAAAAAGGGTAGGTAGATATATAAAAAAGATAGATAAAAGCATAGATAGATAGATATAGATAGATAAAAAAGGATAGATAGATAAAAAAAGGATAGATAGATAGATAGATAGATAGATAAAAAAGGATAGATAGATAGATAAAAAAGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAAAAAGGATAGATAGATAGATACCTTCAGTTTGGCCACACAGTGAACAGTTGCTGATGGATTCTTCAGCTGCAGTCGCTCCTTCAGCAGGTTACTGCCATAGGCAAAATACAGGAAGGTGGATCCGTTCTTGTGATCAGTGCTGTTGTCCATGCTTGAGGCTTCAGAGGGCAGAGGGACTAGGAGGATGAAGATGAGGAAGAGGAGGGGCAGGGTGAGGAAATGGAAGAGGGACAGATTTCAGTGGAATCACAGTCAGCAGGGTTCAGAGGCAAAGCGAATGGCGTGACAGACATGGAAAACACCTCTGTTACAGGACCTTTCAGCAACACTCCATTCTCATGCAAATCCATTGTGTCCCATACCACTGCATTCATCTGACACTAATGACTGTAAGCAAGAACTTTCCCAACTGTCCCTCTAGTGGAAGTAGCAGGAATAACATGTAAAGTGGTGAAATGACTGAACATTCGCGTCTAAAATTCACGCCTTAGAAACCAAGAAAACCGTCCTTTTTCTGGCTTTTAAGCTGATTACACAATTAATATCATAAAGAAACATAAAACAATGTGATTTAAGAAGTGATGATGCATTAATGTTGATCAAATGTTGCTTTCATCAGTCTCACTAGTGTTTAACACATTAAGTAACTATCATTGTAGGAACATGATGTTTTAATTTTAAAAATATAAGAACTGATTTGTTTTTTTAGGGTCTCTTGGTTTAGGTTTGTTGTTTCTAGAGCCAAAATATTAATCATCCGCTCAATGCATTTGATAAAACAAGAGCTTAAATAATGAAAAACTGACGTTAAAGCAGATGCACATCTCTCAATATCGAGCATTTTATCACCCACCTGCTGAACACAGAAGGTTGAATCCAGCAGCGAGCAGCATGAGGCTGATGAAGAGGTTTTCACAGGAGGACATGGTGTTTCAGTGTTGAGCTGGTTCTTTGTCGATGGAGAGACGGCTGGAGCGGGACATATGAACTGGGGGAGGCTCCCTTCCCTCCCCTTTTGGTCTCATCAGACCCCCGAGGGGGAGAAAGCTTTTGCTGAGTCAATGCAAATGTGATCCATTCGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU340153 True 3722 lncRNA 0.38 4 2381035 2385164

Neighbor

gene id symbol gene type direction distance location
CI01000086_02366362_02373059 SLC6A20 coding downstream 7976 2364331 ~ 2373059 (-)
CI01000086_02192695_02193522 NA coding downstream 187269 2192635 ~ 2193766 (-)
CI01000086_02032793_02044182 BRD9 coding downstream 336853 2032712 ~ 2044182 (-)
CI01000086_02018950_02030464 NA coding downstream 350510 2018820 ~ 2030525 (-)
CI01000086_01994840_02008387 TPPP coding downstream 372648 1994595 ~ 2008387 (-)
CI01000086_02400288_02400580 NA coding upstream 14694 2399858 ~ 2400608 (-)
CI01000086_02403053_02403317 ZNRF2 coding upstream 17708 2402872 ~ 2403317 (-)
CI01000086_02543856_02545475 FZD1, FZD1.L coding upstream 157204 2542368 ~ 2545808 (-)
CI01000086_02610598_02642920 CDK14 coding upstream 225403 2610567 ~ 2642920 (-)
CI01000086_02886112_02888612 KDF1A coding upstream 500283 2885447 ~ 2890213 (-)
G299616 NA non-coding downstream 29752 2346302 ~ 2351283 (-)
G299718 NA non-coding downstream 46793 2334009 ~ 2334242 (-)
G299717 NA non-coding downstream 47495 2333275 ~ 2333540 (-)
G299716 NA non-coding downstream 47885 2332914 ~ 2333150 (-)
G299711 NA non-coding downstream 58240 2321826 ~ 2322795 (-)
G299734 NA non-coding upstream 71963 2457127 ~ 2457340 (-)
G299739 NA non-coding upstream 78337 2463501 ~ 2463712 (-)
G299765 NA non-coding upstream 115968 2501132 ~ 2501412 (-)
G299766 NA non-coding upstream 116264 2501428 ~ 2501664 (-)
G299770 NA non-coding upstream 121026 2506190 ~ 2511270 (-)
CI01000086_01852638_01897719 UBR5 other downstream 477616 1852146 ~ 1897719 (-)
G299528 NA other downstream 685858 1668206 ~ 1695177 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other downstream 1119798 1257926 ~ 1260025 (-)
G299107 NA other downstream 1254237 1126738 ~ 1126798 (-)
G299173 NA other downstream 1613156 765617 ~ 767879 (-)
G299598 NA other upstream 480518 2865682 ~ 2868103 (-)

Expression


Co-expression Network