Gene
RNA
| Item | Value |
|---|---|
| gene id | G298706 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000086 |
| NCBI id | null |
| chromosome length | 2920448 |
| location | 2546716 ~ 2549968 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU339117 | True | 1568 | lncRNA | 0.42 | 2 | 2546716 | 2549968 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000086_02387094_02397102 | NOD1 | coding | upstream | 149571 | 2387094 ~ 2397145 (+) |
| CI01000086_02381193_02384764 | NA | coding | upstream | 161588 | 2381193 ~ 2385128 (+) |
| CI01000086_02335074_02346679 | SACM1L.L, SACM1LB, SACM1L, SACM1LA | coding | upstream | 199796 | 2335074 ~ 2346920 (+) |
| CI01000086_02310487_02314131 | RBM24B, RBM24 | coding | upstream | 232569 | 2309348 ~ 2314147 (+) |
| CI01000086_02266795_02305843 | KIF13A | coding | upstream | 240727 | 2266795 ~ 2305989 (+) |
| CI01000086_02741241_02763692 | XRCC1 | coding | downstream | 190688 | 2740656 ~ 2764358 (+) |
| CI01000086_02773589_02785090 | DRD2L | coding | downstream | 223621 | 2773589 ~ 2785122 (+) |
| CI01000086_02790491_02793665 | NA | coding | downstream | 240523 | 2790491 ~ 2794239 (+) |
| CI01000086_02807666_02845401 | PHLDB3, ETHE1 | coding | downstream | 256400 | 2806368 ~ 2845762 (+) |
| CI01000086_02848037_02858638 | NA | coding | downstream | 297064 | 2847032 ~ 2858832 (+) |
| G298694 | NA | non-coding | upstream | 89185 | 2457323 ~ 2457531 (+) |
| G298676 | NA | non-coding | upstream | 128900 | 2415382 ~ 2417816 (+) |
| G298596 | NA | non-coding | upstream | 214957 | 2330579 ~ 2331759 (+) |
| G298577 | NA | non-coding | upstream | 220991 | 2322896 ~ 2325725 (+) |
| G298611 | NA | non-coding | upstream | 225036 | 2253116 ~ 2321680 (+) |
| G298743 | NA | non-coding | downstream | 60598 | 2610566 ~ 2610887 (+) |
| G298744 | NA | non-coding | downstream | 63025 | 2612993 ~ 2693507 (+) |
| G298792 | NA | non-coding | downstream | 152669 | 2702637 ~ 2702912 (+) |
| G298777 | NA | non-coding | downstream | 153682 | 2703650 ~ 2723553 (+) |
| G298850 | NA | non-coding | downstream | 352080 | 2902048 ~ 2902710 (+) |
| G298529 | NA | other | upstream | 665263 | 1876890 ~ 1881453 (+) |
| G298381 | NA | other | upstream | 1369800 | 1172156 ~ 1176916 (+) |
| CI01000086_01150842_01165271 | DHDDS | other | upstream | 1380794 | 1150842 ~ 1165922 (+) |
| G298366 | NA | other | upstream | 1398849 | 1136660 ~ 1147867 (+) |
| G298208 | NA | other | upstream | 1566606 | 947191 ~ 980110 (+) |
