G298744


Basic Information

Item Value
gene id G298744
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2612993 ~ 2693507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU339155
CACACACACACACACACACATTTATCCTACGCATAATCCACATTATTATTAGTGAATGAGACCCAGTGTCACTAGAGTGCTGACGTCTCCTTATGAGTCTGATGTACTGTGGGGAATTTCTTACCAAAGTCGGCCAGTTTGAGCTCGCCTGTATCGCTGATGAGCAGGTTTTGTGGTTTCAGGTCCCGGTGAAGGATGTAGCGCTGATGGATGTAAGACAGACCCCTCAATAACTGGAACAGGAACAGCCTGACGTTGTCTGGATGGAGACCCCCGGGATGTTTGTCCATGTACTGACACAGATCTGTGTGCACATATTCAAAGACCAGCGTCAGGGTTTCCTTTGTGTGGATGATGTCGTGGAGCAGCACTATGTTCGCATGCTTCAGGCCTTTCAGCAGAGAAGCCTCTCTGATCGCTGTGAAAGGCGTCCCCTCTTCCTCCTGCAGACGAATCACTTTTAACGCAACCAGCTTCCCATTCACCTTGCTCTTTCCTTTGTATACGGTTGCGTAGGATCCCTCTCCGAGCTTTTCCAGCTTCTCGTATGAATCTGCCTTTCCGAACTTTGGGCTTGTGGGAGAGCTAGGACTGGAGTGACGGCGTAGTTTAGGAGACTCTTTCCCAGAGGAGGAGCTTTTGGAGGTGATGCAGGCATTGTTCTCCGAATGGACTCGCTTCACTTGACTCGCCGGTTTCTCGAAGGGATCGAAGCCGCTCTGCGTCCGCTGCACTCGCACCTTCTTGTCTTCAGGAATGGTGTCCAGGGGTTTGATGACTGAGTCGGATCCCTGGCAGCTGCGAGTGGACATCTTGGTGACACATATC
>TU339156
CACACACACACACACACACATTTATCCTACGCATAATCCACATTATTATTAGTGAATGAGACCCAGTGTCACTAGAGTGCTGACGTCTCCTTATGAGTCTGATGTACTGTGGGGAATTTCTTACCAAAGTCGGCCAGTTTGAGCTCGCCTGTATCGCTGATGAGCAGGTTTTGTGGTTTCAGGTCCCGGTGAAGGATGTAGCGCTGATGGATGTAAGACAGACCCCTCAATAACTGGAACAGGAACAGCCTGACGTTGTCTGGATGGAGACCCCCGGGATGTTTGTCCATGTACTGACACAGATCTGTGTGCACATATTCAAAGACCAGCGTCAGGGTTTCCTTTGTGTGGATGATGTCGTGGAGCAGCACTATGTTCGCATGCTTCAGGCCTTTCAGCAGAGAAGCCTCTCTGATCGCTGTGAAAGGCGTCCCCTCTTCCTCCTGCAGACGAATCACTTTTAACGCAACCAGCTTCCCATTCACCTTGCTCTTTCCTTTGTATACGGTTGCGTAGGATCCCTCTCCGAGCTTTTCCAGCTTCTCGTATGAATCTGCCTTTCCGAACTTTGGGCTTGTGGGAGAGCTAGGACTGGAGTGACGGCGTAGTTTAGGAGACTCTTTCCCAGAGGAGGAGCTTTTGGAGGTGATGCAGGCATTGTTCTCCGAATGGACTCGCTTCACTTGACTCGCCGGTTTCTCGAAGGGATCGAAGCCGCTCTGCGTCCGCTGCACTCGCACCTTCTTGTCTTCAGGAATGGTGTCCAGGGGTTTGATGACTGAGTCGGATCCCTGGCAGCTGCGAGTGGACATCTTGGTGACACATATCTCGTCAAAGCCGCTGTCTTCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU339155 False 828 lncRNA 0.51 6 2612993 2642921
TU339156 True 851 lncRNA 0.51 7 2612993 2693507

Neighbor

gene id symbol gene type direction distance location
CI01000086_02387094_02397102 NOD1 coding upstream 215848 2387094 ~ 2397145 (+)
CI01000086_02381193_02384764 NA coding upstream 227865 2381193 ~ 2385128 (+)
CI01000086_02335074_02346679 SACM1L.L, SACM1LB, SACM1L, SACM1LA coding upstream 266073 2335074 ~ 2346920 (+)
CI01000086_02310487_02314131 RBM24B, RBM24 coding upstream 298846 2309348 ~ 2314147 (+)
CI01000086_02266795_02305843 KIF13A coding upstream 307004 2266795 ~ 2305989 (+)
CI01000086_02741241_02763692 XRCC1 coding downstream 47149 2740656 ~ 2764358 (+)
CI01000086_02773589_02785090 DRD2L coding downstream 80082 2773589 ~ 2785122 (+)
CI01000086_02790491_02793665 NA coding downstream 96984 2790491 ~ 2794239 (+)
CI01000086_02807666_02845401 PHLDB3, ETHE1 coding downstream 112861 2806368 ~ 2845762 (+)
CI01000086_02848037_02858638 NA coding downstream 153525 2847032 ~ 2858832 (+)
G298743 NA non-coding upstream 2106 2610566 ~ 2610887 (+)
G298706 NA non-coding upstream 63025 2546716 ~ 2549968 (+)
G298694 NA non-coding upstream 155462 2457323 ~ 2457531 (+)
G298676 NA non-coding upstream 195177 2415382 ~ 2417816 (+)
G298596 NA non-coding upstream 281234 2330579 ~ 2331759 (+)
G298792 NA non-coding downstream 9130 2702637 ~ 2702912 (+)
G298777 NA non-coding downstream 10143 2703650 ~ 2723553 (+)
G298850 NA non-coding downstream 208541 2902048 ~ 2902710 (+)
G298529 NA other upstream 731540 1876890 ~ 1881453 (+)
G298381 NA other upstream 1436077 1172156 ~ 1176916 (+)
CI01000086_01150842_01165271 DHDDS other upstream 1447071 1150842 ~ 1165922 (+)
G298366 NA other upstream 1465126 1136660 ~ 1147867 (+)
G298208 NA other upstream 1632883 947191 ~ 980110 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011109 cdk14 coding NC_007127.7 CM002900.2 54019456 ~ 54078662 (-)