XLOC_010853


Basic Information

Item Value
gene id XLOC_010853
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33560863 ~ 33592580 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022195
TGTCCTAAAAACTCATATTTAAGTCAACTGATTTTTTACAGAGTCCACACAGAGCTGCCGTGTGTTGACAATATCTTCACTCGAAGCATTTTTCTAAACAGTAACTTCGAGAGAAATCCAGTGTTTCTCCCTTTTGGCCTCCTCCATATTCCTTTCCCGGCTGATCTGATTATTTTTCCCTTCACGTTTTGTCCCAATAGCAAATTACCAATTCTATGAATTGCAAAGCAGCCTCGGAGACGCTGAGGGGTAGAGAGGGGGAGATGCGAAGATTGAAAGGGATCTTTGCAAACACAATCACGTTCTTAAATGGAAATGTGGGGCTTTAAACAAATCTTACATCTCTCCTGTTCCAGTCGTCTAAAACTCCGCAATCAGGCACACGTTCGACTCCATCTAAAACCACAGCTTTTTTTAGAAGATTTTTTTGGCTTTTGCGAGGAAAGTGCCGGAGAATTCAGGCGTCAAACCAAACGGCTTCTCTGTGGACTAATGGAGCTGaaagctgatgatgatgatgatcgaGAAAATATCATGCAAACATCATTTGCCATCAGTGAAAGCAGATCTAGAGATAAGAGgCTCAAAGGGGACTGAGCAACTCGCTTTCGACACATCTGAGGAGTCCACTGAAAGAGCTAATAACGGGATCAAGGGCAGAGGCAGAGAGGTGAGTGTAGATGTGCACAGCAGCTATTTGGGGATCTTCCCCTCATTATTAAGAGGACCAAATGTGGAGTTCAAATAAACAGGGGTGCTTGTGTGAGCAGGATGTTGACTGGAGCAGGTGTGCAGCCTGTGGGCATTTTCTCTACCATATGCACTCAGGAGATTATGGTCAGTTCCAGTAGGGACAGTTTCCCTCGAGCAGCCTGGCCTACCATACTCAGGGGTGTTTGGAAATGAACCTGCACCTTTTGTACTGTCATCCCAGATCCTTAACCCATTTGTATTGCTAGTAAAACGGTAAAGCTACTCAAATGACAGAGAGAGCgagtaaatgtgtttgtgtgtaaaacgCATGAAAGCCATTTAGAATTTGACCTCCTGACACTGCTTAGAGGCAGCTTTTCTTTAGTAGATTTGACACGCTCTCTTATGCGCTCACTTaagtttggattttttttcttcttctggttGTTAAGCCACATAACTGGCAGTGCTGGTGCTTTACTGTATGTCTGCCCTGTCACTGTATGTTCAGAGAGCTGTTGCATCATTTCTTTCTACAATCTAGAggtgtaactttttttttggttatgCTTACAAGCAGTGTCTAAAATTGACTCTCATTAAACAACAAATGTGAGTAAAAATACAAGTCAATAAATATTGGCCAGTTGATTTATTCAATTAAAGTCAGCTGATAAATGCAATTTCTTTTGTCATTTCTGTttaaaggtttgaaatatttgtaCATG
>TCONS_00021240
GTCAACTGATTTTTTACAGAGTCCACACAGAGCTGCCGTGTGTTGACAATATCTTCACTCGAAGCATTTTTCTAAACAGTAACTTCGAGAGAAATCCAGTGTTTCTCCCTTTTGGCCTCCTCCATATTCCTTTCCCGGCTGATCTGATTATTTTTCCCTTCACGTTTTGTCCCAATAGCAAATTACCAATTCTATGAATTGCAAAGCAGCCTCGGAGACGCTGAGGGGTAGAGAGGGGGAGATGCGAAGATTGAAAGGGATCTTTGCAAACACAATCACGTTCTTAAATGGAAATGTGGGGCTTTAAACAAATCTTACATCTCTCCTGTTCCAGTCGTCTAAAACTCCGCAATCAGGCACACGTTCGACTCCATCTAAAACCACAGCTTTTTTTAGAAGATTTTTTTGGTATCActtctatttaaattatttacctCACTGTATTTTTTAGTTCACGTTcgtgtttgtctgtttgtcttgCTCTTATGGGGTGTTTCCACAGGCTTTTGCGAGGAAAGTGCCGGAGAATTCAGGCGTCAAACCAAACGGCTTCTCTGTGGACTAATGGAGCTGaaagctgatgatgatgatgatcgaGAAAATATCATGCAAACATCATTTGCCATCAGTGAAAGCAGATCTAGAGATAAGAGgCTCAAAGGGGACTGAGCAACTCGCTTTCGACACATCTGAGGAGTCCACTGAAAGAGCTAATAACGGGATCAAGGGCAGAGGCAGAGAGGTGAGTGTAGATGTGCACAGCAGCTATTTGGGGATCTTCCCCTCATTATTAAGAGGACCAAATGTGGAGTTCAAATAAACAGGGTTGAACACccttta
>TCONS_00021241
AGTCGTCTAAAACTCCGCAATCAGGCACACGTTCGACTCCATCTAAAACCACAGCTTTTTTTAGAAGATTTTTTTGGTATCActtctatttaaattatttacctCACTGTATTTTTTAGTTCACGTTcgtgtttgtctgtttgtcttgCTCTTATGGGGTGTTTCCACAGGCTTTTGCGAGGAAAGTGCCGGAGAATTCAGGCGTCAAACCAAACGGCTTCTCTGTGGACTAATGGAGCTGaaagctgatgatgatgatgatcgaGAAAATATCATGCAAACATCATTTGCCATCAGTGAAAGCAGATCTAGAGATAAGAGgCTCAAAGGGGACTGAGCAACTCGCTTTCGACACATCTGAGGAGTCCACTGAAAGAGCTAATAACGGGATCAAGGGTATGCATTTCCACCATATGATATCAAGAAAGCGCTTCCCCAACAGATGTTTTGAGATCAACACAATATACTTGCGATGAACTtcaatgtttgtgtgtttttgagggTACATCTATAGTATGACTCTGAAACAGTCAGTACATTTCCATCGACAACAATGTTTTTGATGCCATGTGTTGTGATGCCATGATTCATTTAACACTTTGATTAAGAATTCATTACGTAAACAGGGATTTTTCATTACCTTAATCCAGTTCAGTTCATACTTAGTTAAGTAATCACGAGTCTAATGGGATGTTGagtatagacccttttcacatttacagGTTTCTTAGTAGCGGAAGTCATCAAAGTTGAGAGAACTTAGACCGCAATGAATGGGAGAATacgacaatttttttttacaatgttatt
>TCONS_00021242
AGAGAGGGGGAGATGCGAAGATTGAAAGGGATCTTTGCAAACACAATCACGTTCTTAAATGGAAATGTGGGGCTTTAAACAAATCTTACATCTCTCCTGTTCCAGTCGTCTAAAACTCCGCAATCAGGCACACGTTCGACTCCATCTAAAACCACAGCTTTTTTTAGAAGATTTTTTTGGCTTTTGCGAGGAAAGTGCCGGAGAATTCAGGCGTCAAACCAAACGGCTTCTCTGTGGACTAATGGAGCTGaaagctgatgatgatgatgatcgaGAAAATATCATGCAAACATCATTTGCCATCAGTGAAAGCAGATCTAGAGATAAGAGgCTCAAAGGGGACTGAGCAACTCGCTTTCGACACATCTGAGGAGTCCACTGAAAGAGCTAATAACGGGATCAAGGGTATGCATTTCCACCATATGATATCAAGAAAGCGCTTCCCCAACAGATGTTTTGAGATCAACACAATATACTTGCGATGAACTtcaatgtttgtgtgtttttgagggTACATCTATAGTATGACTCTGAAACAGTCAGTACATTTCCATCGACAACAATGTTTTTGATGCCATGTGTTGTGATGCCATGATTCATTTAACACTTTGATTAAGAATTCATTACGTAAACAGGGATTTTTCATTACCTTAATCCAGTTCAGTTCATACTTAGTTAAGTAATCACGAGTCTAATGGGATGTTGagtatagacccttttcacatttacagGTTTCTTAGTAGCGGAAGTCATCAAAGTTGAGAGAACTTAGACCGCAATGAATGGGAGAATacgacaatttttttttacaatgttatt
>TCONS_00022196
CAGACAATCTCTATCATTATGCATATGCATAAACATTTTTCTGCGGACCCCACAAATAAACAGGTTGCACATCTAATTTAATGTAGCCTATAAAATTAATATGGGACTGCGGATTTAAAACATTTAGATATAACGAAGAGTAAATATTAATACttgtacacattttaaaactaaaatccaCTCACTTGTTCATTTGCAAATCAGTAGGCTTCATTTCATTTGTTGTCCTAAAAACTCATATTTAAGTCAACTGATTTTTTACAGAGTCCACACAGAGCTGCCGTGTGTTGACAATATCTTCACTCGAAGCATTTTTCTAAACAGTAACTTCGAGAGAAATCCAGTGTTTCTCCCTTTTGGCCTCCTCCATATTCCTTTCCCGGCTGATCTGATTATTTTTCCCTTCACGTTTTGTCCCAATAGCAAATTACCAATTCTATGAATTGCAAAGCAGCCTCGGAGACGCTGAGGGGTAGAGAGGGGGAGATGCGAAGATTGAAAGGGATCTTTGCAAACACAATCACGTTCTTAAATGGAAATGTGGGGCTTTAAACAAATCTTACATCTCTCCTGTTCCAGTCGTCTAAAACTCCGCAATCAGGCACACGTTCGACTCCATCTAAAACCACAGCTTTTTTTAGAAGATTTTTTTGGTATCActtctatttaaattatttacctCACTGTATTTTTTAGTTCACGTTcgtgtttgtctgtttgtcttgCTCTTATGGGGTGTTTCCACAGGCTTTTGCGAGGAAAGTGCCGGAGAATTCAGGCGTCAAACCAAACGGCTTCTCTGTGAGGGGAACAGGGAGCTTTTGGAGGGGGCCTTGTGAGATAAGCAGTGGAATTTGTACCGTCTGAAT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060284 regulation of cell development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000092272

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022195 False 1421 lncRNA 0.42 7 33560863 33592357
TCONS_00021240 False 840 lncRNA 0.43 4 33566997 33592335
TCONS_00021241 False 810 lncRNA 0.39 3 33582868 33592003
TCONS_00021242 False 819 lncRNA 0.39 4 33582868 33592106
TCONS_00022196 True 869 lncRNA 0.39 2 33587815 33592580

Neighbor

gene id symbol gene type direction distance location
XLOC_010852 BX537338.1 coding downstream 18905 33515766 ~ 33541958 (-)
XLOC_010851 pnrc2 coding downstream 455186 33101851 ~ 33105677 (-)
XLOC_010850 dop1a coding downstream 463465 33062570 ~ 33097398 (-)
XLOC_010849 snap91a coding downstream 500810 33005688 ~ 33060053 (-)
XLOC_010848 MCHR2 coding downstream 559710 32820327 ~ 33001153 (-)
XLOC_010854 utp11 coding upstream 53141 33645721 ~ 33650578 (-)
XLOC_010855 NA coding upstream 142748 33735328 ~ 33736759 (-)
XLOC_010856 BX530064.1 coding upstream 157487 33750067 ~ 33758285 (-)
XLOC_010857 rspo1 coding upstream 180322 33772902 ~ 33817828 (-)
XLOC_010858 dnali1 coding upstream 333163 33925743 ~ 33930759 (-)
XLOC_010626 CR392024.2 misc downstream 12665688 20895112 ~ 20895175 (-)
XLOC_010847 NA non-coding downstream 741098 32742342 ~ 32819765 (-)
XLOC_010843 NA non-coding downstream 933423 32587438 ~ 32627440 (-)
XLOC_010842 CR848729.1 non-coding downstream 986627 32574110 ~ 32574236 (-)
XLOC_010840 NA non-coding downstream 1001080 32558055 ~ 32559783 (-)
XLOC_010859 NA non-coding upstream 446941 34039521 ~ 34044379 (-)
XLOC_010862 AL954327.1 non-coding upstream 707699 34300279 ~ 34306670 (-)
XLOC_010864 AL954327.2 non-coding upstream 759365 34351945 ~ 34352061 (-)

Expression


Co-expression Network