XLOC_010859


Basic Information

Item Value
gene id XLOC_010859
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34039521 ~ 34044379 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022198
ccggccgacatctcccataactgtcagtcaacaaatgcagatttgggctttGCGCATCTCTGTTCAGGTATATCCGCCAATAGCGTGTGCACCAATAATATCCATAAGCGCTGCGCATTCACGAGACGTGCACGAGAGTCACAGTCGcggcaaaatcaaatgctgaattggaactttttaaactcctaaataaatattggagttacttttgcaagcATGTTGGAAAGATGACACCATGGCTTAAGTATTTCTCTTAGAAAgTGCATTTGTGACAACGTGAACTTCTATAAAGATGTAGTTGGACATTACCTTCAAAAAGCAGAATTATCCaaacacctgaggagatttctctgcatgaaagacttgtgaatgggagattatcctgctgctgcttctccaataaggtaggcaattaaatatgaaagaaatggggatgatgtgtggatgattaACAGGGCTCACTAAGCAACATAACAATCTGTTAACGAGGAAGTAGTGTCTCAAAGCTTGCATACTCAAAAGtgtatatttttccttcacaaaaaagtacatactttgaGCGTTgtaagtatgcaaattgggatgcagcacaTGTTTcattaacacacctgattcagatcatcagctcattagcagagactgaaagacctgttatgggtgtgacaaaggagacatctaaaacatgcagtgttgatagtcctccaggaacgtggttgagaaatacTGCCATCCACACTTATTCGGATGAATTTAAAAAACAGTGCTTTCATCAACAATTGCTCAGCATCAACTCTATAACATTCAGTTGTTTCCCAAAAGTTGGTTATCCACACAAAAATTTTTGAAAGCACTTTTCCTGTATTTCACATCCGTTTAGATGTAAGACGCTAGACTGACCTgcatcatttttgtaatttttgtctatttactttactttgaaacatcactgtaaTATGTTGAGGAAACGCACGTTTAAAATTGGTCGACAATAAGTCGTTGATAAGAGTAAAACGAGTATAAAGATGAAAACGCAAGCAAGAATATAGAATGGAAGAAATGCCAAAACAACAGTTCTCAGTAAAAATGCGCTGTCCTTTGAAGAAAAACTATCTGGAGCATGTGCAAAATGACATAAATCTTTAACAATGCGGTCAAAACGGAGAACATCCAAAATAACACAACAACACAATATCATTCGCCATTTTAGCTGAATTAGTCACAATGCTAAAAATGCGGAATAGATTTTGGAAAGTCTCCGTTTTCACTATACACAACATGAGACaggaaaaatgttgtttttaatttttccaaGTTGGATAGAGTTTTAAAAAAGGTACTTTTTAGCCTCAAAACACAACacaggctgcgtctgaaatcgcctACTATTCAGTGGgttctgcatttgaatttgaatgtactACGCGatcattagaaaagtacgttctatacagtatgaatgcgagTAGAATGAATGGAACTAGGATGCACTACATCCGCtgttttgtcatgatgacaggcCCTTCCTGTGTCAGTGGCGTTGCTTccctcccattcatgaattctcttgcatcatgggatagcctAGTGTTCATCGCATGCGCACTTCAGAATATCACCGGATGTAGTAAGTTATccaggtacttcttgcatactgattttcgactCCTATAAATTTGAACAGTGTACtacatagtatggaagtatgcaattttggatgAAGCCCTAGTGTGCGCagaattcaattaatctttatgtctattgcacttttacaatgtaaattgtgtcaaagcagcttaacatagaaccGACACAGAGAACAATGGATGTCGGAGTAGGTCACTGGTGGGTGTTCAGTGTTCAGGCTAGACCACAGGCCAAAACGAAGATACAAATATACGCTTTTAAACGAAAATGTATTAGTGTGGACATGACCCTAATCATCCCCATTCATTTAATGAACTCTATCACTATTTTTCTCTCTACCTGCAGACCCTTCCTGTCAATTAAGTATACAAGTATACACCTTAAGTGCagtataaacacatttaaaaaaaaccctGGATGAGTTTTCTAGTGTACAGGTATGTCTGTTTTTGATGCGTCTTGATTGTTATACAGTCTGACATTGACAACTGACATAATAATTTGACATGGGGATCAAATTTTTACAGTCTAACAAGCTGCCATCATAAAagttatata

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0030488 tRNA methylation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009451 RNA modification biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0036265 RNA (guanine-N7)-methylation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022198 True 2202 lncRNA 0.38 2 34039521 34044379

Neighbor

gene id symbol gene type direction distance location
XLOC_010858 dnali1 coding downstream 108762 33925743 ~ 33930759 (-)
XLOC_010857 rspo1 coding downstream 221693 33772902 ~ 33817828 (-)
XLOC_010856 BX530064.1 coding downstream 281236 33750067 ~ 33758285 (-)
XLOC_010855 NA coding downstream 302762 33735328 ~ 33736759 (-)
XLOC_010854 utp11 coding downstream 388943 33645721 ~ 33650578 (-)
XLOC_010860 rcc1 coding upstream 141234 34185613 ~ 34195002 (-)
XLOC_010861 phactr4b coding upstream 154918 34199297 ~ 34285106 (-)
XLOC_010862 AL954327.1 coding upstream 255900 34300279 ~ 34306670 (-)
XLOC_010863 hivep3b coding upstream 277015 34321394 ~ 34425561 (-)
XLOC_010864 AL954327.2 coding upstream 307566 34351945 ~ 34352061 (-)
XLOC_010626 CR392024.2 misc downstream 13144346 20895112 ~ 20895175 (-)
XLOC_010853 NA non-coding downstream 446941 33560863 ~ 33592580 (-)
XLOC_010852 BX537338.1 non-coding downstream 497563 33515766 ~ 33541958 (-)
XLOC_010847 NA non-coding downstream 1219756 32742342 ~ 32819765 (-)
XLOC_010866 CR626886.1 non-coding upstream 512637 34557016 ~ 34565638 (-)
XLOC_010867 NA non-coding upstream 616681 34661060 ~ 34886237 (-)
XLOC_010868 NA non-coding upstream 871188 34915567 ~ 35330001 (-)

Expression


Co-expression Network