XLOC_010875 (AL773558.1)


Basic Information

Item Value
gene id XLOC_010875
gene name AL773558.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 35821321 ~ 35824708 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021289
tcaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTCAGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGAAGTGGGCAGAGGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttaaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaacaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataa
>TCONS_00021290
ttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctatctctgttaacacatttgtatttgtttgattcaTTCTTGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAAAGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGAAGTGGGCAGAGGcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAATAAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGGAGAAGCAGTGGATTCTTGTGGCAGAGATGGccaaccactataaatacctttcAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAAAGTACtgATTCGACATGTGGCCTAAACAAAGAGGGGTTAAAAGGTCTATGGATCATCATTCTCAgaaagcaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagattttttaaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaacaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaataaaataaaattttcatcatctataa
>TCONS_00021291
tctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTTATACTCAGATTTATTATCAAGATCTCAATTATTAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTATTGATATCAGAAGACCGCAGCAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGAAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattataaccgttactattattgtcattttttcagtagcagaagcaaagacaacaaaaaacagaagtgatatggaTGTCTTCGTCATA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021289 False 966 processed_transcript 0.41 7 35821321 35823946
TCONS_00021290 False 1131 processed_transcript 0.39 6 35821321 35824079
TCONS_00021291 True 602 processed_transcript 0.42 5 35821991 35824708

Neighbor

gene id symbol gene type direction distance location
XLOC_010874 NA coding downstream 159769 35659889 ~ 35661552 (-)
XLOC_010873 scmh1 coding downstream 234910 35555029 ~ 35586411 (-)
XLOC_010872 ctps1b coding downstream 288384 35415575 ~ 35532937 (-)
XLOC_010871 taf12 coding downstream 406244 35408856 ~ 35415077 (-)
XLOC_010870 si:dkey-34d22.3 coding downstream 426899 35385690 ~ 35394422 (-)
XLOC_010876 eva1ba coding upstream 119514 35944222 ~ 35975254 (-)
XLOC_010877 NA coding upstream 196588 36021296 ~ 36021844 (-)
XLOC_010878 stk40 coding upstream 213422 36038130 ~ 36093776 (-)
XLOC_010879 mrps15 coding upstream 270874 36095582 ~ 36118514 (-)
XLOC_010880 capn7 coding upstream 343199 36167907 ~ 36196700 (-)
XLOC_010626 CR392024.2 misc downstream 14926146 20895112 ~ 20895175 (-)
XLOC_010868 NA non-coding downstream 491320 34915567 ~ 35330001 (-)
XLOC_010869 BX004992.1 non-coding downstream 726361 35094846 ~ 35094960 (-)
XLOC_010867 NA non-coding downstream 935084 34661060 ~ 34886237 (-)
XLOC_010866 CR626886.1 non-coding downstream 1255683 34557016 ~ 34565638 (-)
XLOC_010881 NA non-coding upstream 573797 36398505 ~ 36424101 (-)
XLOC_010882 NA non-coding upstream 636929 36461637 ~ 36465645 (-)
XLOC_010883 NA non-coding upstream 666809 36491517 ~ 36491840 (-)
XLOC_010884 NA non-coding upstream 682781 36507489 ~ 36570467 (-)

Expression


Co-expression Network