XLOC_010882


Basic Information

Item Value
gene id XLOC_010882
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36461637 ~ 36465645 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021821
atgacaacatATAAAGAGACGTGGGATGGTATCTGTAAGCAGATAATACATCACACCGAaccaaaagacagaaagaaaataagtaaaacattAGAAAGTCAGTGGACATATCTCTCAGGTCTAAATGGCTGGACAGAGACAACTAAAAATCAGGGAAAGTTACTGCAGATACTTTTAACAGAGGAGAAAAGGGCAGATACAGATTTGGTACTGGCCAGACAAAATAGGGACAAAACTGGGGTTTGGAAGAAGGGAGCAGCAAACAGAGAAATAGAAAAAGCAGAAGATAGACTGAGACAATGGAGCAGGGTAGCTGCAGCCATGGTTACCAAAGTAAAAAGTGCTGTGTGGGCAGATCAAAGGGACTCACCAGAGAGACCCCCACCCTATAGTAGTGCAGAAGAAAAACCCAAAACCCCCTCAGCACCAATGCAGATGCCAGTAATGATAGTAAAAGGGGGAGAAATAGAAACTACTACTAAACAAGCTGACAAAGATTACAAGTTCACAATAAAACAGGGCGCTATAGAGGTCGAAGAAACAGAGGAAgataaaaaacaaagacagttgAAAATGGCCCTAAAGGAAGTTCAGACTAAAGTAGAAATAGAGGAAGCAGTAAAAAAGGAAATAGCAAAGCAGTTTACCGCAAACATTCAACTCGCAAGAGACAGTGTAAACCAAACAATGTCGAGGGTAGCAGGAATGGAGGAAAGAACACATATAACATTGAAACAACACAAAGAAAAGCTAGAAAATATTAAGTCACAGCTGTTGAAACTACAGCTGGAAGAGGCTAAAGCTAAATTACAGAATAAGATGGTCGTAAgacaaaatacacaaatgcaacaAGTCATTGCTCCTCTGACTCATGTACCTGCTATGTCGCCTGTGCAGCCACCACAACCTAGCCCACAACCACTAATTTCTTACACACAGTCACCATTATGCCTCAGCCCAACACAGCACAACAGACATACATACAGTAGCCAAACCAATATCATAGAGggggcaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaattaaggcCTGTCTTGACTGGACTGTAATTGACATCTCCTCCTAGAGTTCTGAGTTTGCTGATGGCTGTTGTTTTAGAGCAGATGATGGAAGTCTGAGGACAGGTTAGGGCATATAAATTGAAAAAGTCTAAATGATACCAATGGTTGAATTACTTAAGTTAGCAAAAGATTTAAGGGTTAACATCTAACTTGAATGCGCATATGTGGGTACAGCTGTACATGTCAAATTGCCACAGTGGCGGAGGTCTGGTTTCTTTACCTCCTTGGGTCGACCTATCTCAGGAACAGAAAACTGTTGAGCATTCCTTTGGTCTGGCTCATTTTCATGGTACTGCCggcattaaatataattatagatATGAAAGAAAATTGGCTAAAATCTGTGTACACACTAAAATTAACTGACTGAATGTTTTGCCTATTGCATTAATGTCTATACATTCTTCTGCAACAGGACCCGACTTCACACCTTTTGAGCTTTTGACAGGTCGACAGTATCCTGGCCAGAGTTCTGCGCTGTCCCTGGAAAGCATTTACACCATTGTCACCGAGATGTTATCATGACAAACTAACTTCTTTGATTGCAGCTTTTGTCTTTTTAGGTTACTCCTGACAAACAATCTAAGGAACCAGTGGCCAATGCTGCTGATTGGGTAGACCTTTGCCTGTTTAAGAGGAAGTGGAGGAACTGCTGGATATGGTGTGATCTCTTATGAGATCAAGAGAGGGAATTGtggaattatatttttatgtggaattatatttttgtttttaaatgtatgtctAAGATTGATATTAAGTTTTGCTATTTTTTACTGATGAAATGCTCATTGTTTGAAATGTGAGCCTATCGCTTTGTTTGAAATGTGAGCCTGTCGCTTAAAGCTTCGCTTCTAGAGAAACGGGGTTTTTCCACAGAAGTAAGACGAGAGATCTGAGCTCATGGAAAGCTGTGCTTTGGTACAGGATGTGGTTTAACACCTGCAAGGAACCAGCATTTCATAGGCGTATCTCAGTCTGTGTAGgggtgcatgtgtgttttgtgtgtgtttgtgtgtgtgtacaggctGCTGGCTGATTCTAACTGGCTGAGATGAGATCTGATGATGGATTGGAGGCTCATCGAGAGTGGGGAGGAGACAACCAagaataaaaactattgttttatGATTGTGCGGCACTACTGGAGCGCCCAGTGTGCCTTATGCATGGTGGCTATTCAGTATTCCTGAGCTCAGACATTGTTGATCTGATTCtctcttttttattaaattttgatTACTTGATAAAGTTAAGTTTCCTGCGTCTACTTTCAAGCGAATCCTGAACTCGGGGAGGGAAAAACCATTCCCTACAAGagccacacacattcattcatgcttTAGCATGacggtttgttttgtttgtaagtCACGATATGTGGCAGTGTTTGACTTCTACAGACGGAAACTTACCTGGAAGAAAATTTGTGACTATTGGAGTTTGCAACTGCAATAAACGTAAACATCTTCGGAAACAAGTAAGACTGTTCGTTTCATTTACACTACATCAACCAGAGGACAGTGTGCGTCAGCTGGGTGCCTGTCTAACAACATCTCAGGGACTTCAAGCAATAGGCTTAGCCTCT
>TCONS_00021820
atgacaacatATAAAGAGACGTGGGATGGTATCTGTAAGCAGATAATACATCACACCGAaccaaaagacagaaagaaaataagtaaaacattAGAAAGTCAGTGGACATATCTCTCAGGTCTAAATGGCTGGACAGAGACAACTAAAAATCAGGGAAAGTTACTGCAGATACTTTTAACAGAGGAGAAAAGGGCAGATACAGATTTGGTACTGGCCAGACAAAATAGGGACAAAACTGGGGTTTGGAAGAAGGGAGCAGCAAACAGAGAAATAGAAAAAGCAGAAGATAGACTGAGACAATGGAGCAGGGTAGCTGCAGCCATGGTTACCAAAGTAAAAAGTGCTGTGTGGGCAGATCAAAGGGACTCACCAGAGAGACCCCCACCCTATAGTAGTGCAGAAGAAAAACCCAAAACCCCCTCAGCACCAATGCAGATGCCAGTAATGATAGTAAAAGGGGGAGAAATAGAAACTACTACTAAACAAGCTGACAAAGATTACAAGTTCACAATAAAACAGGGCGCTATAGAGGTCGAAGAAACAGAGGAAgataaaaaacaaagacagttgAAAATGGCCCTAAAGGAAGTTCAGACTAAAGTAGAAATAGAGGAAGCAGTAAAAAAGGAAATAGCAAAGCAGTTTACCGCAAACATTCAACTCGCAAGAGACAGTGTAAACCAAACAATGTCGAGGGTAGCAGGAATGGAGGAAAGAACACATATAACATTGAAACAACACAAAGAAAAGCTAGAAAATATTAAGTCACAGCTGTTGAAACTACAGCTGGAAGAGGCTAAAGCTAAATTACAGAATAAGATGGTCGTAAgacaaaatacacaaatgcaacaAGTCATTGCTCCTCTGACTCATGTACCTGCTATGTCGCCTGTGCAGCCACCACAACCTAGCCCACAACCACTAATTTCTTACACACAGTCACCATTATGCCTCAGCCCAACACAGCACAACAGACATACATACAGTAGCCAAACCAATATCATAGAGggggcaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatctctaatgtTACGTAAGCCTTACATTAACCATAAAAAAGCCTATAATAACTAACACACTTAGTCATATCAGTTGGGAATTAAACCTAATTTACTTTCTGACATTTCAAAAACAATATAGAATAGTTTCAATTATAAATGCCATACATATAATAACCGACTTTCCTGTGATTGTGCACCTATCACTGAAttgtgtctaaaaaaaaaaaaaaaaaaaaaaaaattaattaaggcCTGTCTTGACTGGACTGTAATTGACATCTCCTCCTAGAGTTCTGAGTTTGCTGATGGCTGTTGTTTTAGAGCAGATGATGGAAGTCTGAGGACAGGTTAGGGCATATAAATTGAAAAAGTCTAAATGATACCAATGGTTGAATTACTTAAGTTAGCAAAAGATTTAAGGGTTAACATCTAACTTGAATGCGCATATGTGGGTACAGCTGTACATGTCAAATTGCCACAGTGGCGGAGGTCTGGTTTCTTTACCTCCTTGGGTCGACCTATCTCAGGAACAGAAAACTGTTGAGCATTCCTTTGGTCTGGCTCATTTTCATGGTACTGCCggcattaaatataattatagatATGAAAGAAAATTGGCTAAAATCTGTGTACACACTAAAATTAACTGACTGAATGTTTTGCCTATTGCATTAATGTCTATACATTCTTCTGCAACAGGACCCGACTTCACACCTTTTGAGCTTTTGACAGGTCGACAGTATCCTGGCCAGAGTTCTGCGCTGTCCCTGGAAAGCATTTACACCATTGTCACCGAGATGTTATCATGACAAACTAACTTCTTTGATTGCAGCTTTTGTCTTTTTAGGTTACTCCTGACAAACAATCTAAGGAACCAGTGGCCAATGCTGCTGATTGGGTAGACCTTTGCCTGTTTAAGAGGAAGTGGAGGAACTGCTGGATATGGTGTGATCTCTTATGAGATCAAGAGAGGGAATTGtggaattatatttttatgtggaattatatttttgtttttaaatgtatgtctAAGATTGATATTAAGTTTTGCTATTTTTTACTGATGAAATGCTCATTGTTTGAAATGTGAGCCTATCGCTTTGTTTGAAATGTGAGCCTGTCGCTTAAAGCTTCGCTTCTAGAGAAACGGGGTTTTTCCACAGAAGTAAGACGAGAGATCTGAGCTCATGGAAAGCTGTGCTTTGGTACAGGATGTGGTTTAACACCTGCAAGGAACCAGCATTTCATAGGCGTATCTCAGTCTGTGTAGgggtgcatgtgtgttttgtgtgtgtttgtgtgtgtgtacaggctGCTGGCTGATTCTAACTGGCTGAGATGAGATCTGATGATGGATTGGAGGCTCATCGAGAGTGGGGAGGAGACAACCAagaataaaaactattgttttatGATTGTGCGGCACTACTGGAGCGCCCAGTGTGCCTTATGCATGGTGGCTATTCAGTATTCCTGAGCTCAGACATTGTTGATCTGATTCtctcttttttattaaattttgatTACTTGATAAAGTTAAGTTTCCTGCGTCTACTTTCAAGCGAATCCTGAACTCGGGGAGGGAAAAACCATTCCCTACAAGagccacacacattcattcatgcttTAGCATGacggtttgttttgtttgtaagtCACGATATGTGGCAGTGTTTGACTTCTACAGACGGAAACTTACCTGGAAGAAAATTTGTGACTATTGGAGTTTGCAACTGCAATAAACGTAAACATCTTCGGAAACAAGTAAGACTGTTCGTTTCATTTACACTACATCAACCAGAGGACAGTGTGCGTCAGCTGGGTGCCTGTCTAACAACATCTCAGGGACTTCAAGCAATAGGCTTAGCCTCT

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021821 False 2731 lncRNA 0.40 3 36461637 36465645
TCONS_00021820 True 2929 lncRNA 0.39 2 36461637 36465645

Neighbor

gene id symbol gene type direction distance location
XLOC_010881 NA coding downstream 37536 36398505 ~ 36424101 (-)
XLOC_010880 capn7 coding downstream 264937 36167907 ~ 36196700 (-)
XLOC_010879 mrps15 coding downstream 343123 36095582 ~ 36118514 (-)
XLOC_010878 stk40 coding downstream 367861 36038130 ~ 36093776 (-)
XLOC_010877 NA coding downstream 439793 36021296 ~ 36021844 (-)
XLOC_010883 NA coding upstream 25872 36491517 ~ 36491840 (-)
XLOC_010884 NA coding upstream 41844 36507489 ~ 36570467 (-)
XLOC_010885 NA coding upstream 112850 36578495 ~ 36610636 (-)
XLOC_010886 NA coding upstream 114798 36580443 ~ 36599740 (-)
XLOC_010887 pik3r4 coding upstream 255585 36721230 ~ 36748374 (-)
XLOC_010626 CR392024.2 misc downstream 15566462 20895112 ~ 20895175 (-)
XLOC_010875 AL773558.1 non-coding downstream 636929 35821321 ~ 35824708 (-)
XLOC_010874 NA non-coding downstream 800085 35659889 ~ 35661552 (-)
XLOC_010868 NA non-coding downstream 1131636 34915567 ~ 35330001 (-)
XLOC_010892 NA non-coding upstream 491105 36956750 ~ 36959179 (-)

Expression


Co-expression Network