XLOC_010893 (snrnp48)


Basic Information

Item Value
gene id XLOC_010893
gene name snrnp48
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 36974523 ~ 36979597 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021317
ACAGACAACATTCGCAGAAGAAAGGCGTACTTTCGAGCTCTCCTAATGTAAAATGTGTGAAACATCGTTTGTTTCGGGTCTCCAGGAGCGCATGCAGTGTCTTCAGGAGCTCACAGACTTCACAGAAAACTGCCAAGCTGAGCTGAAGGATTTGTTTGAGGCGCTGGGATGGAAACAGGAATTAGATACACATGCAGTCCAGATGGAAGTCTGTCCATACGATCCAAACCACACAGTTCCACAGAACAAGATGGAGAAACACAAAGCCGTCTGTTGGCTCACACAGCAGGGATACTCTAAAGAAGAACAGGCTGAAATGTATGATCCATCAGCATACTATGAGCAAGCTAACATTACTTCCATTTCCCTAGAAAAAGACACATTTCAGCAAATAATTCTTCAGAGCAGGGAAAATGCGTCTCATTGGAGATCAACGGGACTTCACACACAAAGTCTCCCGGACATCCCTCAGAACCATAAGCGCTCATTATGTGACCTTACTGTGGCAGACCGGTTGGCTGTTTATGATCATGTGATGTATGAAGCCAGTCAGCAGAGTGCAAAGAGAGAATCCAACAATGAGGATCTTTATGTAGATCTTGTTGCTAAGATTAAAAAAGAAGTGAATCAGAGTGGGCCAAAGTCTCATCTGGAGGTTTTGGCTGAGATGAGGGACTACAAGAGGCGCAGACAGTCTTACAGAGCAAAAAACGTTCACATCACCAAGAAGACCTACACCGAGGTAATTCGAGAGGTCATTGATGTCCACTCTGGAGAACTAGGCAGGATATGGCAGGAAGCAAAGGAAGAGGAGTCCCAAGTATCACAACAGTCGTCTCACAGAGCGGAATCTGAGAAAGGTCGTTCTGCATCCGTTGAGTCGCGTGCATCTCGTATCAGCTCCCGAGACGAGCATGAGCACAAACGACACCGTAAGCGCAGCCGAAGTCGTAGTCGCAAGCACAGTcgagagaagaaaaaaaggagCAGGAGGGATTCACACTCTCCAGATGTGGAGAGACGtcacaagaaaaagaaaaaaaataagtcttGATGTGTGCAATTCAACAGATCTTAAATGATTTGAATGAATTCTTGTTAATTTCAGGCTTTCTGAAGATTTTTTCTACCAATGTTAATTTTTGATCTGTCTAATTTTTTTTGCTTCCTTTTCATAATGTTATGCTTTAATAAAAATGTGAATagaatatta
>TCONS_00021318
CTCGCACAGACAACATTCGCAGAAGAAAGGCGTACTTTCGAGCTCTCCTAATGTAAAATGTGTGAAACATCGTTTGTTTCGGGTCTCCAGGAGCGCATGCAGTGTCTTCAGGAGCTCACAGACTTCACAGAAAACTGCCAAGCTGAGCTGAAGGATTTGTTTGAGGCGCTGGGATGGAAACAGGAATTAGATACACATGCAGTCCAGATGGAAGTCTGTCCATACGATCCAAACCACACAGTTCCACAGAACAAGATGGAGAAACACAAAGCCGTCTGTTGGCTCACACAGCAGGGATACTCTAAAGAAGAACAGGCTGAAATGTATGATCCATCAGCATACTATGAGCAAGCTAACATTACTTCCATTTCCCTAGAAAAAGACACATTTCAGCAAATAATTCTTCAGAGCAGGGAAAATGCGTCTCATTGGAGATCAACGGGACTTCACACACAAAGTTAGTATTAAGCTAGCTTGCGGCTTCATCTAAACAGTGATTTCAGCACTTTCATAAGAAGTAATGTGGCATATTTGAAATTGTGTGCCAAAATGCACTAGTAGCATCCACATCtttataatttcttttaaaaatatatattcaatgtTTATCTGTGTTCTTTTCTTCCAGTAACAGGGGTGAGTATTTAAGGAAGTCTGGTCTAGACAATTTATCTACTCATACTTGCTGTATCCTTTGGCTCAATATCCTTTTAAAGCCTTGAtcctgaatatttttttcttttcatttattttgtaatgGGTTACAC

Function

symbol description
snrnp48 Predicted to enable metal ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48).

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-4482 Predicted to enable metal ion binding activity. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48).

Ensembl:

ensembl_id ENSDARG00000039989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021317 False 1213 mRNA 0.43 9 36974523 36979592
TCONS_00021318 True 767 lncRNA 0.40 4 36977056 36979597

Neighbor

gene id symbol gene type direction distance location
XLOC_010892 NA coding downstream 15344 36956750 ~ 36959179 (-)
XLOC_010891 aldh5a1 coding downstream 28623 36934183 ~ 36945900 (-)
XLOC_010890 tdp2a coding downstream 68734 36901549 ~ 36905789 (-)
XLOC_010889 pnp4b coding downstream 139890 36807924 ~ 36834633 (-)
XLOC_010888 calb1 coding downstream 175740 36765934 ~ 36798783 (-)
XLOC_010894 BX248115.1 coding upstream 177408 37157005 ~ 37157121 (-)
XLOC_010895 si:ch211-208k15.1 coding upstream 186975 37166572 ~ 37470042 (-)
XLOC_010896 mrap2a coding upstream 967745 37947342 ~ 38001141 (-)
XLOC_010897 plekho1b coding upstream 1035753 38015350 ~ 38067952 (-)
XLOC_010898 si:dkey-23o4.6 coding upstream 1130344 38109941 ~ 38118003 (-)
XLOC_010626 CR392024.2 misc downstream 16079348 20895112 ~ 20895175 (-)
XLOC_010885 NA non-coding downstream 363887 36578495 ~ 36610636 (-)
XLOC_010886 NA non-coding downstream 374783 36580443 ~ 36599740 (-)
XLOC_010884 NA non-coding downstream 404056 36507489 ~ 36570467 (-)
XLOC_010883 NA non-coding downstream 482683 36491517 ~ 36491840 (-)
XLOC_010899 NA non-coding upstream 1219316 38198913 ~ 38341804 (-)
XLOC_010901 NA non-coding upstream 1406211 38385808 ~ 38394558 (-)
XLOC_010904 CU855886.1 non-coding upstream 1582930 38562527 ~ 38562644 (-)
XLOC_010905 NA non-coding upstream 1822808 38802405 ~ 38804152 (-)

Expression


Co-expression Network