XLOC_010897 (plekho1b)


Basic Information

Item Value
gene id XLOC_010897
gene name plekho1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38015350 ~ 38067952 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021330
ACCAGAACTCCACGCGTGACGGCAGAGGATCAACAACGCACGAGGATGCCACTAACACACACTCACCAGCACATTTCTGAGGTCTGTCCGAAATAACCAGCAAATGGTGACCGGCGCGGTGGACGCTGAACGGGAGTAAATTCACCGGAGGAGGCGTAAAGAAACAACCGGGGAGCGACTCTCATTTAACAAAGCGCTTTTCTTTGAGTGTGGCTTTTTCGGGTGTAGGATTTTCAGTGGATTCTTTTGTATCTGGATTGTTCGTGGAGGGAGAGAGCCGGGAAGCGGTGTTTCATTGAGCCATGAAGAAGAACAGTTCGTCAAAGCGGGGCCCTCAGGATGCCAATCAACAGCCTGTGCAGCCCGACAAAACTGGCTGGATCCGCAAGTTCTGTGGCAAAGGAATTTTCAGGGAAATTTGGAAAAACCGATTTGTTATATTGAAAGGAGACCAACTCTTAATTTCTGAAAAAGAGGTAAAAGATGAGAAGAAAATTCAGGAGGTGGTGGATCTCACAGACTACGAGAAGTCTGAGGAGCTACGTAAGGCCAAAAGCAGGAGCAAAAAGAACCACAGCAAGTTCACGCTTCTGCGTTCACGGCAGCCAGGCAACACGGTCCCAAATCTGGTGTTTCTAGCCGTCAGTCCAGAGGAGAAGGAGTCATGGATCAATGCGTTAAATGCAGCCATTACCAGGGCCAAGAATCGCATATTGGATGAGGTGACGGTGGAAGAGGACAGCTTGTTGGCCCATCCGACGCGTGACAGAGCTAAAATACCCCACACTCGCCGTCTGCCCACCCGCGGGCACCTCATGGCCGTGGCTTCTACCACAAACTCAGACGGCATGTTGACGCTGGACCTCATCCAGGAGGAGGACGTCCCAGCAGAACAGGGTCAGGCCTCTGGTGAGGATACTGTGGATAAAGCCTCATCTCAGCGTTCCCCAGATTCCCAACCCTCCAACACGGACACCTCCAAGCTGTCATGCTCCAACGAGATTGCAGGAAAGTCCCAAAGCCTGCCGCGGAAAAGCGAAAGCGCCTTCGACTGGTCGGAGAACCACCGGACGCCACAGCTCCGCAAAAAACCAACAACATCTGAGAAGAACCGCTGTGCCTCCATGGACGAGATTCTAACGCACTGCGAGGCACGAGCTCTTCCTCACTGCTCCACGTCTGCACCCGTGCAGCCCATCAGCCAGCTCCAGGACCTCATCACACTGAAGCTGGAGAGAACTCAGGAGCTGCTGACCGAGGTGCGGGCGCAGGGCAAAGGAAAGGGCTCTCCGGCTGGGAAGAGCTCCAGTCCTGAGGGCAAGCGGAAAGAGGCCGAGCGGCTCCTAGAAGAGGCCGCATCTACATGGGGTCAGGCTCGGGACGTCTTGGAGGAAGTGAAAGAACTCCGAGCTTTATACAAGCAGCTTGACTCTTCTGCCACAATCAGTCCAACACAGAACGGCAAACTGAACAGCCCTCAACAAGCCAACCACCGAAAAAGCATGATGTGAGGTCATCTTTCAATGCACTCTTCCTGCTTTAGCATTGCTGGAATCAACGAACACCATGAGCTTTACCTGTATGTACGAATTGTTCAAGGGCAAATCTAGTTTCTTCCACTCCCTTATATCAACAGAAATCCAAGGGCCGGTGGGTTTTTACGCAAACACAAACTGTTGCGCTATATCGGTTTTCACAGTGGTGTCAACGGGGGACTGTAAAAGCTTCAGGGTGAGAAACAGCAGATGGCGGTTGTCATCACCAGTCTTTCGCAATGTGAATGTTTTCATAATACACTGGAGGAGCTTAGTTTAGATCTGGCCAGGTCTGTTTTACTCCATGGGTCATTTTTgtatgtagtaataataataataactcccaGCACACTTGCTCTACTGTTAACACAATCCAAGCTCATAATAAGATGCAATCAGCCAAAGGCGGATTGGCGGAAAGGCTCACGGAAAGAGCACTCGTCACATGGGCTCTTAATAGTGAACAAAGCCATTGAACATGAACACAGATGACGTCTGGTGCCAGTGTTGAAGAAACAGCTGCCATTAAAGACGAGGCTCCATGCAGTAAAGGAAAGgatgaataataattaaacatttgcaCTATATGGAGAATGCTGTAAAACGAGAGTGACACTGGCAAGCTATCTTTTCAAACCTAAGAGGCAGAACAGACAATCTACTGTAGGGAAATATGGGTCGTGTAGCTCAAAGTCTTTACACCTAAGTGGTATTTCCGAAAAAAAATGTTGGTATCTTTGGAAATCAAAAGCTGCCTTAGAGTATTTTCAAAAGGGCACATGCAAACTGCATTTTAAACTCTGCAAAGTCTCTGAATGAACGCTTGTATGTTTCAATTTTCAGAAATTTGCCTACAAGTTGCCTGCACCGCGAGAGATGCTTTTAAAGCAGGATTTTATTATCGCTTGCGCTTTGCTTTGCAggcttttttttgtctttggGGGAACTATGCAAGGTTGCATGGGAGAATCTCATGAAACTTGTCAAGAGCatttcacagaattttttttacaaagaacAGAATCTATATTTCCTTAGGAAGTAAATGcaggaattttatttttttgcatatgtatttttttattttacgccATTTGTTATggacatttaggcccaatcccaattctacccctaatagggctgtgcgatttggggaaaatatctaactGCGATTTTACTACAGATTTTGTGATTGCGATTTAATTTTATAATCAAGATTCGGCTCAATAATATCTATCGTTGCTCCTTACTGCAGTGAGTGGtagttaaaaacagaaaatgaaaacataTAATCTTACGCCAACATTTacttcaaaagttcacacttagctgatgattgattataaagcttgtttgtcatgctgtcctgggagagaccCCTGAGCTCATGAGCTCCTCGAACCCGGGGCTCCCatcctgtttgcagggcgagaggggagtttgagctcaggtagatctccagaactcccctgctgtcgtagctaatgaacagatagtgattgctcttaagagataactacttactaggagcatttggattagtcaattaactcaagttgcatgtttttggatggtgggaggaaaccgggaacCCCAGGGCAACCCACATAAGCGTGTGGGGAGACTTGTAACCCCGCACAGAAATGCacagctggcttggtaagaactagaaccagtgacgttcttgctgtgaggcaacagtgctaaccgctgggccaccatgccacccatctaggaaaggaggaggagtaggggtggaaaggaGGATTCTTCataacgaagatggctgttatatggacaTTAGGGTATTTCAATCGTCTAATTggtaaatcataaattgaataatgcaggaccagctgtaaGCAATCATAAACatatgatcctctcgaaattagtttataaataaactttactagaTCGAGTGTGACTAGCAATACTATCAGTTGattttttagcaagacactcctcatataCCTATACGcatctgtggtgcttttttaaacCACAATATTCCATATTACTGACGTGTGTTTTTTCTTTGATATGAATTCGTCTGTTAATACTTCTGAAGCGGTAAACACCATCATCccacttgtttttattattgtgggTGTTCCATTTAGTGCGGTTGCGCAATtttgattgggcagaatgaatgtgtcctcactcaattggctagtaagactgtcacacacagatggCAGTCACGCTTTTGCTCTGGGCAGGagaaattaaatacatatatatttcaaatcGCAGCATCTTGTGATTAGCAAATTGCCAAATTTCAGATTGCATTGCGATTAATCATGCAAGTTTTGCGCATTCACGTGAAGGGGtcggggtgtcccaattctctttatcttgaaggcgtagggctaaggggaagggttaGAAATCCCttaaaacagagatttttcaggaccacactatAAACCAAGGAGTACGAACATTTCCCAGAATATCTATAAcgacagcatggctgcacacggacgtcaggagatgcacaaattagtatttttgtcattattaaattTTTCTACAACAAACAGGCATATGtgttaatacattcataactgcgtttgtgttttactgtcatgctttgaaaaaaactgctaaaataaaaacagctaacataaaaacccatctataatccctaataataactcctgtatagtagtccagcaacattctgtcactcgatgacacttaaatactctgtcagaaaagtctattggctgggaatgagctttttacagtgtctgctataatcttaatgttgttttcgtgtatttacattaatgaatatgatcacggtgtaaatgcacagtacagttacatctttttgccacattatatcgaTATAATAACATGGTATCGTTGCCTTCGGTGATTTCCTAACATAATAAACACCAAAAACATAACACAACtttaataactacagcagtcgccatcatcaATGTCATATGTAGTACGAGCTCCctatgacatatgatgacgtgtgcaggtgtagtggtgtcccatttcttaggggtaaactttgaagcccttcccttcacactctgtttcaagagccaaggggaaggggtacaaaaatagaatatgGATTGGGCCCTAATGATAATGGTCATGCAGAATTCAGTTTCTTTATGCAGTTCGGGCAGTAAAATGTGGCATGCTTTCATGAGATTCCCCCACAAAAATGAGCTTGAAATAACCCACAGGAATCAGGAGTTACTGGCAGTGTGCAGTACGCTATTGCATTCAACAACCAAAGGGTACGTCTTGCCAGTATAAAAACCACCTTGTTTTACAGTTAGTAGCTAAATAATGTGTTTGCACAATTCTATTGGTACAGGTCAACCTGTTCTGTTACGAAGACTTGATTAAAAAAACAGTGttatattttttgtacattttattgtaaagtgctttttttgtttttgtagagAAAGACTTTGAGGAGAGTTTTTGCTTTTAAAACGTTTGACTTCCCTGAAAACACAACTGGACACTTCCTCGCTTCTGGAAAGTACATTTACGCTTCCAAAGGTAATAAAGCACAAAGACGGTCATTTTGTTTAAGTACAGGTGAACGCTTTAAATGTCATTCATTACCCCTCTCATTTGAAATTCTATTGTCTCGCATTATCGCCACGCAGATGCCAAAGGTTTCCTGTACCTCGCACGTTCTTATCTGAAACACAGCGCTGCAGTTGTGGGATCTTTTCAGGTTTAATCAGATGAATTGCTTTTGTTTGGTCAGCTGCTGGTGTTATGATCTGATTTTTCTGACAGCGCCAGCGGAAGGTGAATCGAATTACCCGAGCATCTGTCAGGTATTAGATTACATAAACCCAATCTTTCCCACAGGAGAACAGAAACAAAAGCCAAACTACACCTGTACTTCAGCAGTTGTGCTCATTTACGACATGTTTACTTCATGTTGACTTTGTGATTGCTTAGAGATGACGCTTCCTTCACGCTTTTACTTTTGAGCTATTTATGTATGCCATACGATTGTTCATCCGCTCTTTTTGTCGTTTGATAAAATGTGAATGAAGAGGAAAATCTCTCTGTGTTATTGTGGTCAGACTAGTTATTTTGCATAGGGACGTTTCATTTGTGAGCTAGTGCGTCACACTGCCACTGGCGCACACAAAAAAAGGCTTATGTAATCAGAAAGGAACAAACAATTGATTGTACCATCGAGTCGGCCATTGAAAACCTGaatgttttcagcattttttcaaTTCCGTTCTACATAAACACATGCAATCTCTCAGATGGACGCTTCATTACAAGCTGCTGGTCAACAACTCAGATACTCGTTTTCGAATCATGTTCAGATGGACGGTTGTAAAAATCTCTGTGTACATTATTTCACATTCTGTAGCTAATTGTAAATGGTGGTCGGTTTTTGAAGAGCAGAAACCTGTATGTGGCTATTTGTAAGCTCAGGACAGGAGAATCTCTGATGTACTTGAGACACAACCACTTGTGCAATTAAAGTGATCCTCATTTG

Function

symbol description
plekho1b Acts upstream of or within regulation of myoblast fusion. Predicted to be located in cytoplasm; membrane; and nucleus. Is expressed in adaxial cell; fast muscle myoblast; head; and somite. Orthologous to human PLEKHO1 (pleckstrin homology domain containing O1).

GO:

id name namespace
GO:1901739 regulation of myoblast fusion biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-100609-2 Acts upstream of or within regulation of myoblast fusion. Predicted to be located in cytoplasm; membrane; and nucleus. Is expressed in adaxial cell; fast muscle myoblast; head; and somite. Orthologous to human PLEKHO1 (pleckstrin homology domain containing O1).

Ensembl:

ensembl_id ENSDARG00000077499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021330 True 6060 mRNA 0.43 6 38015350 38067952

Neighbor

gene id symbol gene type direction distance location
XLOC_010896 mrap2a coding downstream 14209 37947342 ~ 38001141 (-)
XLOC_010895 si:ch211-208k15.1 coding downstream 545308 37166572 ~ 37470042 (-)
XLOC_010894 BX248115.1 coding downstream 858229 37157005 ~ 37157121 (-)
XLOC_010893 snrnp48 coding downstream 1035753 36974523 ~ 36979597 (-)
XLOC_010892 NA coding downstream 1056171 36956750 ~ 36959179 (-)
XLOC_010898 si:dkey-23o4.6 coding upstream 41989 38109941 ~ 38118003 (-)
XLOC_010899 NA coding upstream 130961 38198913 ~ 38341804 (-)
XLOC_010900 cdc42se1 coding upstream 243935 38311887 ~ 38333976 (-)
XLOC_010901 NA coding upstream 317856 38385808 ~ 38394558 (-)
XLOC_010902 rspo2 coding upstream 385924 38453876 ~ 38553721 (-)
XLOC_010626 CR392024.2 misc downstream 17120175 20895112 ~ 20895175 (-)
XLOC_010885 NA non-coding downstream 1404714 36578495 ~ 36610636 (-)
XLOC_010886 NA non-coding downstream 1415610 36580443 ~ 36599740 (-)
XLOC_010884 NA non-coding downstream 1444883 36507489 ~ 36570467 (-)
XLOC_010904 CU855886.1 non-coding upstream 494575 38562527 ~ 38562644 (-)
XLOC_010905 NA non-coding upstream 734453 38802405 ~ 38804152 (-)
XLOC_010907 NA non-coding upstream 880692 38948644 ~ 38950147 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_02288848_02311105 PLEKHO1B coding CI01000016 null 2287297 ~ 2311105 (-)