CI01000092_00566301_00571771


Basic Information

Item Value
gene id CI01000092_00566301_00571771
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 566165 ~ 573256 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00566301_00571771.mRNA
GTATTTATGTCTGAGAGACTTGCTCTGGCAATCAGCCAATGTCAGAGCGCGCTGTCAAAGCAGCAACGTAAAGACGCTATGCTCCGCCCATTTCCAGCAGGTGGCGTTGATTAGCTGTCTCTGAATATAGCTCCTCATGGAGCGGGTGAAAACAAACAGACCTTTTGCTTCCTTCACGTTGGGTGATGTGTGCGTATATAGTATGAAACAACCAGAGCCAGAGTTTTCCACAGTTATGCAGCCATCAGATGAAGTTCATGTTGAGCGACCCAGGAGACAATCAGCTCTTCCAGCACACTTGCAGGATTATGACTCGACTGGTTATAACCTACCTAGACCCACGACCAGCTATTCACAAAAATTCTCATGTGCTGCTTCAGCCCAAGAGGATGTCAGGACGGACACCCCACAGGCAGCAGCATATCATGGTGATTATCACAGTCCACAACAGTGGTATACAACAGATCGGTGGGACCAACATGTGGAAGCACTACGTGAGGAAAATGCTGATTTAAGGAAACTCCACAGTGACCTGATTACCACAGTACGGCAACTGAAAGAGGAAAGAGATGATCTTAAGCAGGCCAACACTAAGTTTTCATCACATGACTCAATTACAAGCAGAGGTGAAACAATTGTTAAGCTGGCAAAATCAGCAGCCACAACTTCCTCAGATTTCATCTCCACTCCCTGTACCTGGTCAGTCAAAGATCCTAAACCAGTGCCAGCCCCACGGAGGCCAAGATTAACTGAACCTGTGTCAAATCCAAACTATACCCTAGCATCTCATGATACATTACAAGATGGTAGTTCAACAGACAGTGTGGAGAGCTCAGAGTGTTCAAGCAGTCAAAGTCTTTCCTCTACTGTTGATGGCATGAGAAACCTGCGCCTGAGTTCATCCAGGCACCAGAAAGATAACACCAGTCCACCAAGACAGAGTAGGAGAAGAGATAGGCAAAATTGGATTAAGGGGCACAACAGATGCTGGCGCTGTGGACGGGGCCATAGATCATCAGAGTGTAATCTTAAGATGCGCTACAAAGCATGTAATGGGCATCACTTGCTTGTTCTTCATCAAATTAATGTACGGAACAAGGAGAAAGCAGTGGAAGGAGAGGATCCATCTGCTAGCCCTATCATGGGGGAGGCTGTCAACGATGTGTTATTCATTGACAAGCCCCCAGGAAAAAGGAGCATTTTGCTGCATTTGCTGCAAGGTAATCCAGAGGACCTGCCACTGCGCACAGTCAGACAAAAGCTAAAGGTCCTGCATGGGGCGGCTGTTTCCTTCAACCTTTCACCAGGCTGTCAGCCAAACAAGGTATATCCAATCAGTGGAACTTTCACTGCATCAGAGCTGGGGCTTGGAGTACACTGTCATACTGTTAAGGCTTTACAGAAAATGTACCGTCACCTTAAAGGACTTCCCCTCCAAGATATTGAAGCTGCTCATCCAGTTTTGCTCATTGGATCAGACTGCCCTCATTTAATCATTCCAGTCGAACCAGTTCGCTTGGGCCCACCAGGAGCAGCGGTAATGCCTCACCTAAGAAGCCTAGAGCATCACCTCAGTAAGTCTCCTGATCAAGCAGCTATCTACCAGGCTAAGATTAAACGACTGGAGCAGGCAGGTTACATTGCTGAACTGCAGTCAGGAGCAGAAGACACTCCAAGTATCTTGGCAGAAGGAGGATTTGAACTCAGGCAGTGGGCCAGTAACGCACCTTTAACCATAAGTCACTTGTCAGCAGCATCCATATCTGACAGTGCTGAGCGATTGATTACCAAGGGTAATGCCTCAAACCATGAATCAGTGCTTGGACTTCAGTGGAACTGTCAAACTGTTACCTTGTTATATAAGCTCTGTGTTATAGAGTGCCAGGAAGTTACTATGCACAGTATTTATAAGGTACTTGCCAGCCAATATGATCCTCTTGGCTACATCATCCCGTACACCACACATGCAAAGGTCTTCGTTGGTACACGAGTGACAGAAATTCAGGACCTTACCAGCCACTGCGAATGGAGCTACGTTGATTCAATCAGTAACCCGGTAGATGATATCACCCGAGGGAAAAGGCTGGCAGAACTAGGACCACAAAGTCGTTGGAATACCGGGCAACCATTCCTTCATCTCTCATCTGATCAGTGGCCAGTTACACCCCCATCCTCTCTTATTGACAGTGATGAACTTAGAAACTCTACATTCTGTGAGATTGAGCCCGAGTTGATGCATCCTATTGTGCTTGATTCCCATCATCCTGTCACTACACTTCTTATTAAGGATTATGATACAAAGCTGCTTCACCCAGGTCCTGAGAGAATACTGGCAGAGATGCGTAGGAAATACTGGATCCTTCGGGAAAAGATTGGACGCAGAAATGAGAAGCGTTGGGGTATTCTGTTCAAGTGCATGACTACACGTGCAGTGTACATTGACCTCCTTCCCAGACTGGACACAGACTCTTTCCTTACGGCCCTCAGACGTTTTATAGCCAGACGTGGGAAACCCTTTGAGGTTTTATCTGATCAAGGTACCAATTTTAAAGGAGGGGAAAAGGAGCTGCAACAGACATTCATTGCACTAGTTCCAGAGCTTCAGGAACAGCTTGTTAGTCAGCAGCTTATCTTCCGTTTCAACCCACCTCATGCCCCGCATTTCGGGCCTGAAGCAGGCTCTACAGGTCACTTTAGGAACTCAACCTATACCAGAAGAAACTCTTCACATTGTGCTCATTGAAATTGAAGGGATCCTAAATTCTAAACCCCTGGGGTATACATCCTCTAATGTTGCCGATCCAGATTCCATTACCCCTAATTCACTCCTTATGGGGCAGCCTGATACGTCCCTTCCTCAAGTGATATACCCTCAAAGTGAACTACTGAATTTGGCGTTATAGCCAAATCCTAGCAGATCACTTTTGGAAGTGGTTTATTGAGTTTTATTTGCCTGATCTTTAGACTCGTAGCAAGTGGCAACTAGAGTCACCCCACATCATGGTGGGAACTAGTTATGATTGTTGACCCTCAACTTCCTAGGGCCCTATGGCCAATTGGTCAGATCTCTCAAGTATTCCCTGGGTGGACAATAGAATCAGGACTGTTGAAGTAAAAGTTAAGGACAAGTTTTATGTATGACCTGTGGCAAAGGTTATTCAGCTACCTGAGGTTCCAGACTAAATTTTGACTTCTGACCCTTTTTATAATATACAGATTTCCTCATTCTTTAGAAATCTGGGGGCGGCTGTTAAAAAGGTTGTATCTATGTCTGAGAGACTTGCTCTGGCAATCAGTCAATGTCAGAGCGCGCTGTCAAAGCAGCAACATAAAGACACTAAGCTCCGCCCATTTCCAGCCGGTGGCGTTGATTAGCTTTCTCTGAGTAAAGCTCCTCATGGAGCAGGTGAAAACAAACAGACCTTTTACTTCCTTCATGTTGGGTGATATGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATACTCACTCAAATGTCAATGTTATTGCACTTACGTGCTCAAAGTTTATTGACACTGTGGAGTAAGGTGGTGAA
>TU344878
ACTCACTCAAATGTCAATGTTATTGCACTTACGTGCTCAAAGTTTATTGACACTGTGGAGTAAGGTGGTGAAATAAAGCGAACATCAAAGAACTTTCATGCTGCTGCTTCATGTCTCTAACCGGACATCTGTGGTGAACTAGTCCCCCACTGGCAATCCCTAAAACTGATTGAAGTCTTCAACAGTGTGTGTGTGTGTATATATATGTTTCTCAATCTTATTCTGCCATTCCCCACTTTGGAAGTAGGGAAGGGTTCTGAGCCCCATCTGTTCCCAATCGCCCCAACAGAATGTTAATAAACTAGGCTTTAAGTTTAACTGTTAAAATGTATTAATTTATTTTATTAACATCACATTTTAAAAAAGACCATTATTTTAGAACGTTTCCCCTTATTGTTTCCATGGCGACGCGTCATGCTTGTCACGTCACACACCGCAGCCACAATAACACTGTATGACAGATGTAACGCTTTTATTTCGTTTCTCCTTTTTTTTATTCAAAATATTCACAAACTTGCTTACCATGTCATCAACTATCTGATATTCCGATTCTCATATGTATAAGTGAGTGTGTTTTGTCGTTTAAAAATGTTAATAAACGATTTTGATCGAGATGGGCGCTGCCATGTTTGTTTGCGCAGCAGGTCAGAGAGTCCTGTCAGTCGGATTTACAGCACGTGAATTTATAAATTTCTCCCGAAATCCATGTAAGTAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00566301_00571771.mRNA False 3584 mRNA 0.45 9 566165 572612
TU344878 True 716 lncRNA 0.38 1 572541 573256

Neighbor

gene id symbol gene type direction distance location
CI01000092_00433410_00477493 FOXO1, FOXO1A coding upstream 88659 432638 ~ 477506 (+)
CI01000092_00360538_00401759 NA coding upstream 163960 359535 ~ 402205 (+)
CI01000092_00290289_00332484 RCBTB2 coding upstream 233681 290289 ~ 332484 (+)
CI01000092_00234633_00236121 NA coding upstream 329939 234193 ~ 236226 (+)
CI01000092_00217581_00229495 NA coding upstream 336063 217426 ~ 230102 (+)
CI01000092_00658637_00661404 LHFP, LHFPL1 coding downstream 86025 658637 ~ 661404 (+)
CI01000092_00759626_00765910 LHFP coding downstream 187014 759626 ~ 766379 (+)
CI01000092_00779993_00785442 NA coding downstream 207320 779932 ~ 785442 (+)
CI01000092_00868568_00868858 NA coding downstream 295418 868030 ~ 869072 (+)
CI01000092_00869289_00871464 NA coding downstream 296562 869174 ~ 871841 (+)
G303537 NA non-coding upstream 58 565636 ~ 566107 (+)
G303536 NA non-coding upstream 2264 563553 ~ 563901 (+)
G303533 NA non-coding upstream 9247 556525 ~ 556918 (+)
G303532 NA non-coding upstream 9890 556067 ~ 556275 (+)
G303531 NA non-coding upstream 10252 555422 ~ 555913 (+)
G303542 NA non-coding downstream 4072 576684 ~ 577452 (+)
G303496 NA non-coding downstream 55139 627751 ~ 648620 (+)
G303618 NA non-coding downstream 282540 855152 ~ 855448 (+)
G303620 NA non-coding downstream 284464 857076 ~ 857313 (+)
G303621 NA non-coding downstream 285624 858236 ~ 863315 (+)
G303768 NA other downstream 742831 1315443 ~ 1316523 (+)
G304938 NA other downstream 1745180 2317792 ~ 2318234 (+)
G305584 NA other downstream 3094696 3667308 ~ 3667965 (+)
G305596 NA other downstream 3153735 3726347 ~ 3863135 (+)

Expression


Co-expression Network