CI01000092_00759626_00765910 (LHFP)


Basic Information

Item Value
gene id CI01000092_00759626_00765910
gene name LHFP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 759626 ~ 766379 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00759626_00765910.mRNA
GTCTGCTCATTGGTTCAGGATGTGCTCTGTATCCTCTCGGGTGGGACAGTGAGGAGGTCCGACAGACGTGTAACAACAGCTCAGATCAGTTTGAACTTGGCTCTTGTCAGATCGGCTGGGCATATTACTGCACCGGGGCGGGCGCCGCCTCCGCCATGTTGCTGTGCACTTGGCTCGCATGTTTTGCAGGGAAGAAACAAAAGCAATACCCGTACTAGAAGAACGGACCTCAACTACGGCCTGAATCACAGCAGAACGGATGCCTTAGACTCAGTGGAGACCGGATCTGCGGTCCAAGGCATGATGGCTTTCCTCAATTACTGCAACTCCGACTCATAAAGACTATATAATAATAATGCTCATATGGACATTTGTGTGATTCACATGAGCATGCACTTTTCAAAGAGGCGTGATTTTTGACAGTACTTCCTCTGCTCTCTAAAAAACTAGAGAGTCTTTAACGCAAAAGGACCAATTATTTTTTTTTTTTATGACCACTGTTATGAATTTTACAGGCGTACTTGTTTCTTTTTCCCTTTCTCTGAAATTGATATTGTAAAAGTAAGCTTTAGTTCAAATGTAAAAAGATAAGTAACACTTACTTGAAGTCTGTATATATAATGTATTAGTATTATTGTGCCCTATAATACATCTTATGATCACTAGTATGTTAGAGACCTTTAAAAA

Function

symbol description
lhfp Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including brain; genitourinary system; hemolymphoid system gland; skin; and spinal cord lateral wall. Orthologous to human LHFPL6 (LHFPL tetraspan subfamily member 6).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00759626_00765910.mRNA True 687 mRNA 0.41 2 759626 766379

Neighbor

gene id symbol gene type direction distance location
CI01000092_00658637_00661404 LHFP, LHFPL1 coding upstream 98222 658637 ~ 661404 (+)
CI01000092_00566301_00571771 NA coding upstream 187014 566165 ~ 573256 (+)
CI01000092_00433410_00477493 FOXO1, FOXO1A coding upstream 282120 432638 ~ 477506 (+)
CI01000092_00360538_00401759 NA coding upstream 357421 359535 ~ 402205 (+)
CI01000092_00290289_00332484 RCBTB2 coding upstream 427142 290289 ~ 332484 (+)
CI01000092_00779993_00785442 NA coding downstream 13553 779932 ~ 785442 (+)
CI01000092_00868568_00868858 NA coding downstream 101651 868030 ~ 869072 (+)
CI01000092_00869289_00871464 NA coding downstream 102795 869174 ~ 871841 (+)
CI01000092_00887219_00908525 NA coding downstream 120840 887219 ~ 908525 (+)
CI01000092_00964013_00967452 NA coding downstream 197508 963887 ~ 980369 (+)
G303496 NA non-coding upstream 111006 627751 ~ 648620 (+)
G303542 NA non-coding upstream 182174 576684 ~ 577452 (+)
G303537 NA non-coding upstream 193519 565636 ~ 566107 (+)
G303536 NA non-coding upstream 195725 563553 ~ 563901 (+)
G303618 NA non-coding downstream 88773 855152 ~ 855448 (+)
G303620 NA non-coding downstream 90697 857076 ~ 857313 (+)
G303621 NA non-coding downstream 91857 858236 ~ 863315 (+)
G303592 NA non-coding downstream 143558 909937 ~ 910307 (+)
G303768 NA other downstream 549064 1315443 ~ 1316523 (+)
G304938 NA other downstream 1551413 2317792 ~ 2318234 (+)
G305584 NA other downstream 2900929 3667308 ~ 3667965 (+)
G305596 NA other downstream 2959968 3726347 ~ 3863135 (+)

Expression


Co-expression Network