CI01000092_00887219_00908525


Basic Information

Item Value
gene id CI01000092_00887219_00908525
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 887219 ~ 908525 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_00887219_00908525.mRNA
ATGAAAAAGCATGGATATGACAGGTCAAATCATCTATCCAGACCATTTAAAAACAAAACTGTGTACACGCCTGTGATTCAACCACAAGACTTTAATGAAAGCATGTATCCTGGTTTCAGCCATGACTCTAAATTTGCTGAAGTCCTCAAAACATTGAGATCAAATCTGAGAAAGAAGTTTGAGTGTTTGTATGAGGGAATATCAAAGCAGGGAAACCTAACACTCCTGAATGAAATCTACACAGAGCTCTACATCACAAAGAGTGAAAGTGGAGAGATCAGTAATGAGCATGAGGTGAGACAGATTGAGACACAGTCCAGGAGAGCAGAAACAGAGGACACACCGATCAAATGCAATGACATCTTTAGACCTTTACCTGGACAACACAAACCCATCAGAACCGTGCTAGCAAAGGGAGTCGCTGGCATTGGAAAAACAGTCTCTGTGCAGAAGTTCATCCTGGACTGGGCTGAAGGGAAAGAGAATCAGGATGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGCTCAACTTGATGAAGGACAAAACACTCAGTCTTTTAGATCTTCTTCATGTTTTTTTCCCTGAAACAAAAGAAATGGAAATATCCTGTGATAAGTATAAAGTTTCATTCATCTTTGATGGTCTGGATGAGTGTCGTCTGTTTCTGGATTTTCAGAGCGATGTGAGGTTGTGTGATGTGACTAAATCAGCCTCAGTGGACGTGTTGCTGACGAACCTCATTGCAGGGAATCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCAGCTGATTTGATCCCCTCTGAGTGTATCCATCGAGTGACAGAGGTACGAGGCTTCAGTGACCCACAGAAGGAGGAATACTTCAGAAAGAGAATCAGTGATCAAATTCTAGCCGACAGGATCATCTCACACTTGAGGTCATCAAGGAGCCTCTTTATTATGTGTCACATCCCAGTGTTCTGCTGGATCTTAGCCACTGTTCTAGAGAAGGTGTTAAAGAAACCATGGAAAGGAAAGATCCCCAAAACTCTTACTCAAATGTACACACACTTCCTGATCCTGCAGACCAACATCGAGCATGAGAAGGACTATGAAATGAAAGTGAAAGAAGACATGATCATCAAACTGGGAAAACTGGCTTTTCAGCAGCTTGTGAAAGGCAACCTAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTGTACTCCGGATTGTGCACTCAGATGTTCAGAGAGTTGGGCTTGTATCAAGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCAGCTCTATATGTGCATCTCTCCTTTATAAACAACAGCATCAATGTGTTTGACCAGATTACCACACCAACTAATGGAGACAAAGTTTCACTATCTGATCTCCATCAGAGAGCTGTGGATGAGGCTTTAGACAGTAAAAATGGGCATCTGGACCTTTTCCTTCGTTTCCTTCTGGGTCTGTCAGTGAAGTCTAATCAGAATCTCTTACATGAACTAACGACACAGACAGGAAACAGCTCTCACAACAATGAGAAAACAGTTTGCTATATTAAAGAAAAGATCATTATGAATCCCTCTCCAGATAAATACATCAATCTGTTTCACTGTCTGAACGAACTGGGGGATCTTTCTCTGGTGAACGAAGCTCAACCTCATATGAGCTCTAGAGGATTACGTAATGTGAAACTCACCTCATCTCAGTGGTCAGCTTTAGTTTTTGTGTTGTTGACCTCAGAGCGGGTAATGCATGAATTTGACCTGAAGAGCTTAATTGGAGAAGAAAATTATCAAGTGATCGCCCTGCAAATCCTCTGCAGCCCCCCTCCAGAGGCTCACAACAAGTTTGCCAGCCCTGCCTCCTGCAGTCTTCCACTAGCTCCTGGTACTTGGCGCGATTCCTCTCATTGGCCTTGTCCATGCGCTCTTCCCAATGCACAGTTGAGTTATTGTGGTGTCACAGATGAAGGTTGTGCTGCCCTGGCTTCAGCTCTGAGATCAAATCCCTCACACCTGAGAAAACTATATCTGTCATTTAATAATCCAGGAGACTCAGGAGTGAAGCTGGTCTCTGCTGTACTGGAGAATCCTCACTGTAAACTGGAGGAACTGTGGTTGAATGATTGTGGTGTCACAGATAAAGGTTGTTCTGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAAAACTGTATCTGTCTGAAAATAAACTAGGAGACTCAGGAGTGAAGCCGCTCTCTGCTGTACTGGATAATCCTCACTGTAAACTGGAGGAACTGGGTTGTTTGTTAGTCTTCATGCTTAAACTGCCTCTTGAATTAAGCACAATTTATTTACAGGTCTCTCCAATACATTTGTTTTGGTCTTTAACTTCACACGGCGTACAGTTCAACTGGAGTCTG
>TU344934
GGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCAGCTCTATATGTGCATCTCTCCTTTATAAACAACAGCATCAATGTGTTTGACCAGATTACCACACCAACTAATGGAGACAAAGTTTCACTATCTGATCTCCATCAGAGAGCTGTGGATGAGGCTTTAGACAGTAAAAATGGGCATCTGGACCTTTTCCTTCGTTTCCTTCTGGGTCTGTCAGTGAAGTCTAATCAGAATCTCTTACATGAACTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_00887219_00908525.mRNA False 2457 mRNA 0.44 7 887219 908525
TU344934 True 262 lncRNA 0.41 1 889786 890047

Neighbor

gene id symbol gene type direction distance location
CI01000092_00869289_00871464 NA coding upstream 15378 869174 ~ 871841 (+)
CI01000092_00868568_00868858 NA coding upstream 18147 868030 ~ 869072 (+)
CI01000092_00779993_00785442 NA coding upstream 101777 779932 ~ 785442 (+)
CI01000092_00759626_00765910 LHFP coding upstream 120840 759626 ~ 766379 (+)
CI01000092_00658637_00661404 LHFP, LHFPL1 coding upstream 225815 658637 ~ 661404 (+)
CI01000092_00964013_00967452 NA coding downstream 55362 963887 ~ 980369 (+)
CI01000092_01034513_01049419 MAML2 coding downstream 125988 1034513 ~ 1049419 (+)
CI01000092_01050305_01051867 NA coding downstream 141780 1050305 ~ 1052460 (+)
CI01000092_01163367_01169844 NA coding downstream 254783 1163308 ~ 1170769 (+)
CI01000092_01625114_01626286 NA coding downstream 716082 1624607 ~ 1626717 (+)
G303621 NA non-coding upstream 23904 858236 ~ 863315 (+)
G303620 NA non-coding upstream 29906 857076 ~ 857313 (+)
G303618 NA non-coding upstream 31771 855152 ~ 855448 (+)
G303496 NA non-coding upstream 238599 627751 ~ 648620 (+)
G303542 NA non-coding upstream 309767 576684 ~ 577452 (+)
G303592 NA non-coding downstream 1412 909937 ~ 910307 (+)
G303659 NA non-coding downstream 154629 1063154 ~ 1063471 (+)
G303667 NA non-coding downstream 162884 1071409 ~ 1071679 (+)
G303668 NA non-coding downstream 163288 1071813 ~ 1072021 (+)
G303768 NA other downstream 406918 1315443 ~ 1316523 (+)
G304938 NA other downstream 1409267 2317792 ~ 2318234 (+)
G305584 NA other downstream 2758783 3667308 ~ 3667965 (+)
G305596 NA other downstream 2817822 3726347 ~ 3863135 (+)

Expression


Co-expression Network