XLOC_010901


Basic Information

Item Value
gene id XLOC_010901
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38385808 ~ 38394558 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022214
GCGAATCTCCGGCAGCTGATCCTCCGCCACAACTGCGAATGAAAGAGGAGCTCATGTCAACCTGGATCAACAGAGTCTGCGTGAAAATACTCTCAGGGGTGCGGGTGGAGTCTTACCTAAAGTTACTAGACATACGATCAATTCCGAGAAGCgacgcatgcttctgactgtgtgcCAAGCTGTAGCTAGTTGATTTTGAACTTCATTTATATAGTATGTATGAAGCAGTTTTACTTTCACCTACTTCCTTAAACTGAAAAGCACGTGGTTGGGTGTCAGTGAGGGAATCCCTCACAAGGGGTTTGTGGCATGAGTGGTCagattatccaaaaaaaaaaaactgaaaccaaTTTCACACTGTATCTAACTATGATTGGCACCATGCGCTGTGGCAGGATAAGGTTTTGCCTCCCTTTGATTTGGCTCTCCTTGTTAGTTTTGCCTGTGTGCACTACAGTCACAGAGACAACACAAACCTACAATTGCACTGGGAAATTGCGCTATGTAGAGTCCGAATACGCCTTGAAGAACCTGGATTGTGACCAGCACTGGTCTGCTGAGGAACGTTCCATCGGCACACTTTTGAAATTGGTCCCGGAGTGTCACAGTCCATGCATAGAGCTAAGCGCTGGAAAGATGCTACTGGACTCCTGTGTCAATGTCACACTCTCTGTCATCTGCTCAAGAaaacactTGACTGAACACCTCATACATTTCTATGgtaTAATGATGTCTCAACCACTGAACAAGCCTGAGACGAGAGAACACACTGGTGCTATCCTGTCAGTAATTGCCATGGTCATAATCATTGCATGTCTGGTTGCTGGATGTGTATGCACGCACAACAGAAGCAGAAACCGCTTGCTTAGATCCTTCGTCTGAAAGCACTCAATTTGTACAGCTTTGCCTGGACTTCCACGTGGCCCCGTGCCTCCTG
>TCONS_00021826
TGCcgcatataataataaacatgagcTATTCTAGATGAAACAATAGCTCATTTtaatatgtctttcttttctcagTGTGCACTACAGTCACAGAGACAACACAAACCTACAATTGCACTGGGAAATTGCGCTATGTAGAGTCCGAATACGCCTTGAAGAACCTGGATTGTGACCAGCACTGGTCTGCTGAGGAACGTGTAAGTAGACAACAGATTTGTTTTCAGTCATAAATTCTAGAAGTTCTGTATTGTAAAGCTTGCATGCTGTTTTCCTTCAGTCCATCGGCACACTTTTGAAATTGGTCCCGGAGTGTCACAGTCCATGCATAGAGCTAAGCGCTGGAAAGATGCTACTGGACTCCTGTGTCAATGTCACACTCTCTGTCATCTGCTCAAGAaaacactTGACTGAACACCTCATACATTTCTATGgtaTAATGATGTCTCAACCACTGAACAAGCCTGAGACGAGAGAACACACTGGTA

Function

GO:

id name namespace
GO:0032881 regulation of polysaccharide metabolic process biological_process
GO:0032885 regulation of polysaccharide biosynthetic process biological_process
GO:0010962 regulation of glucan biosynthetic process biological_process
GO:0070873 regulation of glycogen metabolic process biological_process
GO:0005979 regulation of glycogen biosynthetic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022214 False 937 lncRNA 0.46 7 38385808 38394558
TCONS_00021826 True 485 lncRNA 0.42 3 38391941 38392587

Neighbor

gene id symbol gene type direction distance location
XLOC_010899 NA coding downstream 44004 38198913 ~ 38341804 (-)
XLOC_010900 cdc42se1 coding downstream 51832 38311887 ~ 38333976 (-)
XLOC_010898 si:dkey-23o4.6 coding downstream 267805 38109941 ~ 38118003 (-)
XLOC_010897 plekho1b coding downstream 317856 38015350 ~ 38067952 (-)
XLOC_010896 mrap2a coding downstream 384667 37947342 ~ 38001141 (-)
XLOC_010902 rspo2 coding upstream 59318 38453876 ~ 38553721 (-)
XLOC_010903 eif3ea coding upstream 162278 38556836 ~ 38631969 (-)
XLOC_010904 CU855886.1 coding upstream 167969 38562527 ~ 38562644 (-)
XLOC_010905 NA coding upstream 407847 38802405 ~ 38804152 (-)
XLOC_010906 BX571839.1 coding upstream 525570 38920128 ~ 38921745 (-)
XLOC_010626 CR392024.2 misc downstream 17490633 20895112 ~ 20895175 (-)
XLOC_010894 BX248115.1 non-coding downstream 1228687 37157005 ~ 37157121 (-)
XLOC_010892 NA non-coding downstream 1426629 36956750 ~ 36959179 (-)
XLOC_010885 NA non-coding downstream 1775172 36578495 ~ 36610636 (-)
XLOC_010886 NA non-coding downstream 1786068 36580443 ~ 36599740 (-)
XLOC_010907 NA non-coding upstream 554086 38948644 ~ 38950147 (-)
XLOC_010908 NA non-coding upstream 605455 39000013 ~ 39024997 (-)
XLOC_010909 BX296552.2 non-coding upstream 635325 39029883 ~ 39109931 (-)

Expression


Co-expression Network