XLOC_010902 (rspo2)


Basic Information

Item Value
gene id XLOC_010902
gene name rspo2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38453876 ~ 38553721 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021334
ATGCAGTTTCGCCTGTTCTCATTTGCGCTGATTGTGTTGAACTGTGTGGACTACAGCCACTGTCAGACGCAGCAGTCCCACCGCTGGAGAAGAAACAAAAGAGCTAGCTATGGAGCTTACCCCATCTGTAAAGGCTGCTCGGTGTGTTCCAAGGACAACGGGTGCATGAACTGTCAGCCCAAGCTCTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTACGGCGAATGTCTTCACGCCTGTCCGTCAGGCTACTACGGCATGCGAGGGACAGAGATCAACATGTGCTCCAGGTGCAGGATAGATGATTGTGAGGCCTGCTTCAGCAAAGACTTCTGCACAAAGTGCAAGCTTGGTTTTTACTTGCACAAGGGTCGTTGCTTTGAAAAGTGTCCGGAGGGCTTTGCTCCCCTAGAAGACACCATGGAGTGTGGAGAGGGTTGTGAAGTGGGCCAGTGGAGTGAATGGGGGACCTGCGCCAGAAGAAACAAAACCTGTGGTTTCAAGTGGGGTCTGGAAACCAGAACAAGGCATATTGTGAAGAAGCCACCAAAGGACACAATACCATGTCCAACCATCGCTGAATCTAGGAGGTGCAAGATGGCAATGCGACACTGCAGAAAAGGAGGTTCGGGGAAAGGCCACCGGACCAAAGACCAGAAGAAAAAATCCAACAAGCAGAGGCTGCGCTTGCGGGCTCAGAACCAACACAGCGACCACCTCGCCTCCATTCGGGCAGGccagtaaaaaatataaataaatgaaaagacttTTCGATGGAACAAAGACCACAAAGCTGCTAACCCattgctccacacacacacaaacacacacacacacatcttcctAAACGGGATTCTTCACGCTCATGCAGTCACACTGTGTCTCTGTACCTCCTGCTGCTTCCCTCGTCCCGTCCGACCCATGACCCCACTGTGATATCATGCACCACTACAGCAGCTGTTCATAAAGCTCACATCTCATCCTACTCCAGGACGACCAAGAGAAAGACTGAGCTGGAAGCACAGAAAGCGTAGAGGAGCAGAAACGGGCACAGAGCCACGAACGGATAATGACTGAAAAACAAGAGAGAGACTTCTGTGTATTTATGTACAATTTACACCCTCGAATCAAAGCAGAGCGCGTCATGAATTGCCTTTCTCCACGGATAGGTACTTTGTTTTTCATAGCAATGTTGCAAACCATGCATAGTTGCCCAAAGTTATTACTCTCAGCACAAGATGTTTACGTCCAGACCGCTTTATGCTTAAACTGTATATTGTGGGTAAGAATCTTAGTTGTTCAACTAGCATGGCCACAAACTCATTTGTACATAGTTGGTGAGTTTATCTAATAACGGTAACATTgatgagaaatatatatatatataaaaaaaattactgtattttcagtATTGACACCTTCAGCGTTTAAATGTGTAAAGGGTTATAATACCAGCTACAGTTTAAAAACGAACAAAAAAGCTCAAATAAAAGCATAGCCTCCACATAGCGGCATTTATATGgtatataattgatttatttattgattccgttttattttttattattattattattgactttaTGTTTGGTGAAAATGTCTGTACCTGATACTCCTCAGTGCTGAAGTATTCTTTCAACCACTTATAAACACGATACAACACAAACTCCGACAGCGgagaagcgatcgctggttaatGTCCCTCTGAAAATCATTGTGTAAACCTGCAGCAGCTGAAGTATATCGTCAAATGATTGATAATGTGTATATTGTGTGCTATTAAAACGCAGTTCATGTTGCACTTTGTGACGTTGCATATTTTTCCGAACTCCGCCAGGCTCTTGTCAAGCTCCGCTGTTACGTAACGTTTGTCATTTCGCAGCACACCCAACAGACATGGCCAATTGGCAGCGGAGAATAGGCCTCTTATTGAAATGTGACATCATTCGGAGCCGCTGTAAGTCTTTCTGACAGGTGCAAATGGCATCACCGCAGGCACTGAGAGCGTTTCACACGAGCTCCCAGAACgaacataaataaacattttcttcagGTGGGTTCTGCCAGAGTGCTTTAATTTGAGTCATGGACAATTAACCCAGCGCTGTGTGCTTTATACTGGTTGCCGCTGGGGATTAAAAACGAGCCTGATCTTGCAAACAGATCATGTATGAAGAGTCAGACCACAGAGGTTACATTTTGATGGACCCCTGAATCTGGAAATTATTTCCAAATGGGATTAGCGATAAAAAGTCTACGGCACATATGCAGTATTAGACAATACAGAAAAGTTG
>TCONS_00021335
AGCTAGCTATGGAGCTTACCCCATCTGTAAAGGCTGCTCGGTGTGTTCCAAGGACAACGGGTGCATGAACTGTCAGCCCAAGCTCTTCCTGTTCCTGAGGAGGGAGAGGATGAGGCAGTACGGCGAATGTCTTCACGCCTGTCCGTCAGGCTACTACGGCATGCGAGGGACAGAGATCAACATGATAGATGATTGTGAGGCCTGCTTCAGCAAAGACTTCTGCACAAAGTGCAAGCTTGGTTTTTACTTGCACAAGGGTCGTTGCTTTGAAAAGTGTCCGGAGGGCTTTGCTCCCCTAGAAGACACCATGGAGTGTGGAGAGGGTTGTGAAGTGGGCCAGTGGAGTGAATGGGGGACCTGCGCCAGAAGAAACAAAACCTGTGGTTTCAAGTGGGGTCTGGAAACCAGAACAAGGCATATTGTGAAGAAGCCACCAAAGGACACAATACCATGTCCAACCATCGCTGAATCTAGGAGGTGCAAGATGGCAATGCGACACTGCAGAAAAGGAGGTTCGGGGAAAGGCCACCGGACCAAAGACCAGAAGAAAAAATCCAACAAGCAGAGGCTGCGCTTGCGGGCTCAGAACCAACACAGCGACCACCTCGCCTCCATTCGGGCAGGccagtaa

Function

symbol description
rspo2 Predicted to enable heparin binding activity. Acts upstream of or within fin development and skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including brain; fin; forebrain midbrain boundary neural rod; pectoral fin bud; and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in tetraamelia syndrome 2. Orthologous to human RSPO2 (R-spondin 2).

GO:

id name namespace
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0001501 skeletal system development biological_process
GO:0033335 anal fin development biological_process
GO:0033336 caudal fin development biological_process
GO:0033337 dorsal fin development biological_process
GO:0033338 medial fin development biological_process
GO:0033339 pectoral fin development biological_process
GO:0033340 pelvic fin development biological_process

KEGG:

id description
ko04310 Wnt signaling pathway

ZFIN:

id description
ZDB-GENE-060503-667 Predicted to enable heparin binding activity. Acts upstream of or within fin development and skeletal system development. Predicted to be located in extracellular region. Is expressed in several structures, including brain; fin; forebrain midbrain boundary neural rod; pectoral fin bud; and posterior lateral line ganglion. Human ortholog(s) of this gene implicated in tetraamelia syndrome 2. Orthologous to human RSPO2 (R-spondin 2).

Ensembl:

ensembl_id ENSDARG00000079570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021334 False 2297 mRNA 0.45 5 38453876 38553721
TCONS_00021335 True 631 mRNA 0.53 4 38455426 38518270

Neighbor

gene id symbol gene type direction distance location
XLOC_010901 NA coding downstream 59318 38385808 ~ 38394558 (-)
XLOC_010899 NA coding downstream 112072 38198913 ~ 38341804 (-)
XLOC_010900 cdc42se1 coding downstream 119900 38311887 ~ 38333976 (-)
XLOC_010898 si:dkey-23o4.6 coding downstream 335873 38109941 ~ 38118003 (-)
XLOC_010897 plekho1b coding downstream 385924 38015350 ~ 38067952 (-)
XLOC_010903 eif3ea coding upstream 3115 38556836 ~ 38631969 (-)
XLOC_010904 CU855886.1 coding upstream 8806 38562527 ~ 38562644 (-)
XLOC_010905 NA coding upstream 248684 38802405 ~ 38804152 (-)
XLOC_010906 BX571839.1 coding upstream 366407 38920128 ~ 38921745 (-)
XLOC_010907 NA coding upstream 394923 38948644 ~ 38950147 (-)
XLOC_010626 CR392024.2 misc downstream 17558701 20895112 ~ 20895175 (-)
XLOC_010894 BX248115.1 non-coding downstream 1296755 37157005 ~ 37157121 (-)
XLOC_010892 NA non-coding downstream 1494697 36956750 ~ 36959179 (-)
XLOC_010885 NA non-coding downstream 1843240 36578495 ~ 36610636 (-)
XLOC_010908 NA non-coding upstream 446292 39000013 ~ 39024997 (-)
XLOC_010909 BX296552.2 non-coding upstream 476162 39029883 ~ 39109931 (-)

Expression


Co-expression Network