XLOC_010903 (eif3ea)


Basic Information

Item Value
gene id XLOC_010903
gene name eif3ea
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 38556836 ~ 38631969 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021336
GGCACAGGCACAGATCCAGCCGATGGCGCGTTCGCGTTGAGCGCTGCATTGTAAATAAAGTTTTCCGGTTTTGAAGCGCGTCCTTTTCCGTTGCCATCATGGCGGAGTACGATCTGACCACCAAAATCGCCCACTTTCTGGACAGGCATCTCGTTTTCCCACTGCTGGAATTCCTTTCAGTTAAAGAGATCTACAATGAGCACGAGCTCCTCCATGGAAAGCTGGATCTCCTCAGTGACACCAACATGGTGGACTTTGCCATGGATGTATACAGGAATTTATTTCCTGACAAAGAAATACCCAACTCTCTTCGAGAGAAGAGAACTACAGTAGTGGCTCAACTCAAACAACTCCAATCTGAAACGGAGCCAATTGTGAAGGTGTTTGAGGACCCAGAGACCACGAGGCAAATGCAGTCCACGAGGGACGGGCGTATGCTGTTCGACTATCTGGCTGACAAGCATGGCTTCCGTCAGGAGTATCTGGACACCCTTTACCGCTACGCCAAGTTCCAGTATGAGTGTGGGAATTACTCTGGTGCAGCGGAGTACCTGTACTTCTTCAGAGTTCTGgtcCCGGCCACAGACAGAAACGCGCTGAACTCTCTGTGGGGCAAACTGGCTTCAGAGATCCTGATGCAGAACTGGGAAGCTGCCATGGAAGACCTGACCCGCCTGAGGGAGACTATCGATAACAATACGGTTAGTTCTCCTCTCCAATCTCTCCAGCAGAGGACCTGGCTGATCCACTGGTCTCTTTTCGTGTTCTTCAACCACCCCAAAGGAAGAGACAACATCATTGAGCTTTTCCTCTACCAGCCACAgtACCTCAATGCTATTCAGACCATGTGTCCACACATACTGCGCTATCTGACCACAGCCGTCATCACCAACAAGGACGTCCGCAAGCGTAGGCAGGTGCTGAAGGATCTGGTGAAAGTCATCCAGCAGgAGTCCTACACCTACAAAGACCCCATCACAGAGTTTGTGGAGTGTCTGTATGTGAACTTCGACTTTGACAGCGCTCAGAAGAAGCTGCGAGAGTGCGAGGCGgtgctggtGAACGACTTTTTCCTTGTGGCGTGCCTTGAGGACTTCATTGAAAATGCACGTCTCTTCATCTTTGAGACCTTCTGCCGAATTCACCAGTGCATCAGTATAGGTATGCTGGCCGATAAGCTGAATATGACTCCTGAGGAGGCAGAAAGATGGATCGTCAACCTCATTCGTAATGCCAGGCTGGATGCCAAAATCGACTCCAAACTGGGTCACGTGGTGATGGGCAACAACGCCATATCACCATATCAGCAGGTGATCGAGAAAACCAAGAGCCTTTCTTTCCGAAGCCAAATGCTGGCCATGAACATCGAGAAGAAGCAGAGCAACGCAAACCGGAATGAGACTCCAAACTGGGCGGCTCAGGATGCCGGCTTTTATTGAGTGGATCTTTGCAGACCGTACGCTTCCAGCATTCCCATACTGCGGCCGAACATCCTGTTCTCCGTCTCGACTCCCTTGAAGAAGAAATGAGAAAACGGCCTTATTTTTGGGTTCAATGCATCtggtattaaataaaaatgtaaaaaaaaa
>TCONS_00021338
GGCTTTTCCTTTTCTCTTCCATCCATGGTGAGAGCAGTAAACAGAGGCGCTTTCAACACTCTCTGAATTTgtACCTCAATGCTATTCAGACCATGTGTCCACACATACTGCGCTATCTGACCACAGCCGTCATCACCAACAAGGACGTCCGCAAGCGTAGGCAGGTGCTGAAGGATCTGGTGAAAGTCATCCAGCAGgAGTCCTACACCTACAAAGACCCCATCACAGAGTTTGTGGAGTGTCTGTATGTGAACTTCGACTTTGACAGCGCTCAGAAGAAGCTGCGAGAGTGCGAGG
>TCONS_00021339
GGGAATTACTCTGGTGCAGCGGAGTACCTGTACTTCTTCAGAGTTCTGgtcCCGGCCACAGACAGAAACGCGCTGAACTCTCTGTGGGGCAAACTGGCTTCAGAGATCCTGATGCAGAACTGGGAAGCTGCCATGGAAGACCTGACCCGCCTGAGGGAGACTATCGATAACAATAGGACCTGGCTGATCCACTGGTCTCTTTTCGTGTTCTTCAACCACCCCAAAGGAAGAGACAACATCATTGAGCTTTTCCTCTACCAGCCACAgtACCTCAATGCTATTCAGACCATGTGTCCACACATACTGCGCTATCTGACCACAGCCGTCATCACCAACAAGGACGTCCGCAAGCGTAGGCAGGTGCTGAAGGATCTGGTGAAAGTCATCCAGCAGgAGTCCTACACCTACAAAGACCCCATCACAGAGTTTGTGGAGTGTCTGTATGTGAACTTCGACTTTGACAGCGCTCAG
>TCONS_00021340
GCGTCCTTTTCCGTTGCCATCATGGCGGAGTACGATCTGACCACCAAAATCGCCCACTTTCTGGACAGGCATCTCGTTTTCCCACTGCTGGAATTCCTTTCAGTTAAAGAGATCTACAATGAGCACGAGCTCCTCCATGGAAAGCTGGATCTCCTCAGTGACACCAACATGGTGGACTTTGCCATGGATGTATACAGGAATTTATTTCCTGACAAAGAAATACCCAACTCTCTTCGAGAGAAGAGAACTACAGTAGTGGCTCAACTCAAACAACTCCAATCTGAAACGGAGCCAATTGTGAAGGTGTTTGAGGACCCAGAGACCACGAGGCAAATGCAGTCCACGAGGTAAATATTGAAATGACACTACCTGTACTTCTTCAGAGTTCTGgtcCCGGCCACAGACAGAAACGCGCTGAACTCTCTGTGGGGCAAACTGGCTTCAGAGATCCTGATGCAGAACTGGGAAGCTGCCATGGAAGACCTGACCCGCCTGAGGGAGACTATCGATAACAATACGGTTAGTTCTCCTCTCCAATCTCTCCAGCAGAGGACCTGGCTGATCCACTGGTCTCTTTTCGTGTTCTTCAACCACCCCAAAGGAAGAGACAACATCATTGAGCTTTTCCTCTACCAGCCACAgtACCTCAATGCTATTCAGACCATGTGTCCACACATACTGCGCTATCTGACCACAGCCGTCATCACCAACAAGGACGTCCGCAAGCGTAGGCAGGTGCTGAAGGATCTGGTGAAAGTCATCCAGCAGGTATCAGACACCACTAG
>TCONS_00021341
AACACATGGGCATCTTTATGAGGCAGCTGCTGAAGTGAGGAGTAAAAGCCGCTGGATGCTCTTCTGCTCCTGTCTTCAATTTCTCATATGAGATCTACAATGAGCACGAGCTCCTCCATGGAAAGCTGGATCTCCTCAGTGACACCAACATGGTGGACTTTGCCATGGATGTATACAGGAATTTATTTCCTGA

Function

symbol description
eif3ea Predicted to contribute to translation initiation factor activity. Acts upstream of or within camera-type eye development; embryonic viscerocranium morphogenesis; and pigmentation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Is expressed in ceratobranchial cartilage; eye; female organism; and gut. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0043010 camera-type eye development biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043473 pigmentation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3827 Predicted to contribute to translation initiation factor activity. Acts upstream of or within camera-type eye development; embryonic viscerocranium morphogenesis; and pigmentation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Predicted to be active in nucleus. Is expressed in ceratobranchial cartilage; eye; female organism; and gut. Orthologous to human EIF3E (eukaryotic translation initiation factor 3 subunit E).

Ensembl:

ensembl_id ENSDARG00000090697

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021336 False 1589 mRNA 0.50 13 38556836 38629208
TCONS_00021338 False 297 processed_transcript 0.50 3 38578429 38583862
TCONS_00021339 False 471 mRNA 0.52 5 38578451 38609146
TCONS_00021340 False 785 nonsense_mediated_decay 0.49 7 38582766 38629131
TCONS_00021341 True 193 processed_transcript 0.46 2 38626556 38631969

Neighbor

gene id symbol gene type direction distance location
XLOC_010902 rspo2 coding downstream 3115 38453876 ~ 38553721 (-)
XLOC_010901 NA coding downstream 162278 38385808 ~ 38394558 (-)
XLOC_010899 NA coding downstream 215032 38198913 ~ 38341804 (-)
XLOC_010900 cdc42se1 coding downstream 222860 38311887 ~ 38333976 (-)
XLOC_010898 si:dkey-23o4.6 coding downstream 438833 38109941 ~ 38118003 (-)
XLOC_010905 NA coding upstream 170436 38802405 ~ 38804152 (-)
XLOC_010906 BX571839.1 coding upstream 288159 38920128 ~ 38921745 (-)
XLOC_010907 NA coding upstream 316675 38948644 ~ 38950147 (-)
XLOC_010908 NA coding upstream 368044 39000013 ~ 39024997 (-)
XLOC_010909 BX296552.2 coding upstream 397914 39029883 ~ 39109931 (-)
XLOC_010626 CR392024.2 misc downstream 17661661 20895112 ~ 20895175 (-)
XLOC_010894 BX248115.1 non-coding downstream 1399715 37157005 ~ 37157121 (-)
XLOC_010892 NA non-coding downstream 1597657 36956750 ~ 36959179 (-)
XLOC_010886 NA non-coding downstream 1957096 36580443 ~ 36599740 (-)
XLOC_010917 NA non-coding upstream 980925 39612894 ~ 39625362 (-)

Expression


Co-expression Network